RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 DENND2CQ68D51 928 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 LRRC8CQ8TDW0 803 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 STOML1Q9UBI4 398 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SEL1LQ9UBV2 794 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 MAGEA13PA6NCF6 341 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 GPC4O75487 556 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 SERPINI2O75830 405 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 HEXIM1O94992 359 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 LDHAP00338 332 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 TMPOP42166 694 aaKnown RBP7.87□□□□□ -1.15
SYNE1-228ENST00000490135 STX1BP61266 288 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 KIF22Q14807 665 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 NCAPG2Q86XI2 1143 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 LRRN4CLQ8ND94 238 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 COG1Q8WTW3 980 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 FANCLQ9NW38 375 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 EURLQ9NYK6 297 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 CAMSAP2Q08AD1 1489 aa7.87□□□□□ -1.15
SYNE1-228ENST00000490135 RGS12O14924 1447 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 GTPBP10A4D1E9 387 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 BCRP11274 1271 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ATF7P17544 494 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 SLC9C1Q4G0N8 1177 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 MIS18BP1Q6P0N0 1132 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 NAF1Q96HR8 494 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 SEC16BQ96JE7 1060 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 TRAPPC9Q96Q05 1148 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 MAF1Q9H063 256 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ANLNQ9NQW6 1124 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 SLC5A4Q9NY91 659 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 C6orf203Q9P0P8 240 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CCPG1Q9ULG6 757 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CTNND2Q9UQB3 1225 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CARD8Q9Y2G2 431 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CTNND1O60716 968 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 MYCLP12524 364 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 MDH1P40925 334 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ASPHQ12797 758 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 TCIRG1Q13488 830 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 PRPSAP1Q14558 356 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 BBS5Q8N3I7 341 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ATP6V1E2Q96A05 226 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CYFIP2Q96F07 1278 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CSRNP1Q96S65 589 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM55Q9BYV6 548 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 RIC8AQ9NPQ8 531 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ZBTB40Q9NUA8 1239 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 SBNO1A3KN83 1393 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 F6X3S4 739 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 FESP07332 822 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ADARP55265 1226 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 GRIK3Q13003 919 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 MYBPC2Q14324 1141 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 KHDRBS2Q5VWX1 349 aaKnown RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 TTC6Q86TZ1 520 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 CFAP61Q8NHU2 1237 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 RAB17Q9H0T7 212 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 RGS16O15492 202 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 TSPAN9O75954 239 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 IFNA8P32881 189 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ECE1P42892 770 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 E4F1Q66K89 784 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 FAM173BQ6P4H8 233 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD42Q8N9B4 389 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 KAT2BQ92831 832 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 NUDCD1Q96RS6 583 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 OSBPL5Q9H0X9 879 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-228ENST00000490135 RAB20Q9NX57 234 aa7.86□□□□□ -1.15
SYNE1-228ENST00000490135 ARHGAP10A1A4S6 786 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PTPDC1A2A3K4 754 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM43BA6NCK2 446 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 CYP2E1P05181 493 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ARHGDIAP52565 204 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PDE4DQ08499 809 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 CFAP221Q4G0U5 840 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZBTB41Q5SVQ8 909 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 IFNL2Q8IZJ0 200 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PGBD1Q96JS3 809 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ELAC2Q9BQ52 826 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 POLR3CQ9BUI4 534 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 SBNO2Q9Y2G9 1366 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZBED4O75132 1171 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 TRIM37O94972 964 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 UBTFL6P0CB48 400 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 EIF4BP23588 611 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PTGISQ16647 500 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 Q6ZUG5 572 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 KLHL7Q8IXQ5 586 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZDHHC9Q9Y397 364 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PPP1R37O75864 691 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 LSP1P33241 339 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 STAT2P52630 851 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ESRRGP62508 458 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 KRT72Q14CN4 511 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 LETM2Q2VYF4 491 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 RYBPQ8N488 228 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 DCLK2Q8N568 766 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 RNF169Q8NCN4 708 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 NRDE2Q9H7Z3 1164 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms