RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SREBF1P36956 1147 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 PSMC4P43686 418 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 TRAPPC10P48553 1259 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 RESTQ13127 1097 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 PKP1Q13835 747 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 MORN1Q5T089 497 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 PIK3AP1Q6ZUJ8 805 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 FERMT3Q86UX7 667 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 NSUN6Q8TEA1 469 aaKnown RBP15.85■□□□□ 0.13
C9orf3-221ENST00000489562 RMDN3Q96TC7 470 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 NAP1L4Q99733 375 aaKnown RBP15.85■□□□□ 0.13
C9orf3-221ENST00000489562 NUDT12Q9BQG2 462 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 COL20A1Q9P218 1284 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 DIS3Q9Y2L1 958 aaKnown RBP15.85■□□□□ 0.13
C9orf3-221ENST00000489562 RPTORQ8N122 1335 aa15.85■□□□□ 0.13
C9orf3-221ENST00000489562 KIAA1217Q5T5P2 1943 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 ADAMTS3O15072 1205 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 HOXD10P28358 340 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 MAP2K5Q13163 448 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 RILPL1Q5EBL4 403 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 XRRA1Q6P2D8 792 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 ZNF467Q7Z7K2 595 aaPredicted RBP15.84■□□□□ 0.13
C9orf3-221ENST00000489562 IWS1Q96ST2 819 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 PXMP2Q9NR77 195 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 ZDHHC9Q9Y397 364 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 LRRC37A2A6NM11 1700 aa15.84■□□□□ 0.13
C9orf3-221ENST00000489562 HOXC6P09630 235 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 RGS2P41220 211 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 ALDH5A1P51649 535 aaPredicted RBP15.83■□□□□ 0.12
C9orf3-221ENST00000489562 USP11P51784 963 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 ARHGAP4P98171 946 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 ZNF792Q3KQV3 632 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 ARHGEF16Q5VV41 709 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 NEK8Q86SG6 692 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 DPP9Q86TI2 863 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 TBCKQ8TEA7 893 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 TRIM47Q96LD4 638 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 TAAR1Q96RJ0 339 aa15.83■□□□□ 0.12
C9orf3-221ENST00000489562 ASB14A6NK59 587 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 PGK2P07205 417 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 CYP3A4P08684 503 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 GCFC2P16383 781 aaKnown RBP15.82■□□□□ 0.12
C9orf3-221ENST00000489562 CNTN2Q02246 1040 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 ORC2Q13416 577 aaPredicted RBP15.82■□□□□ 0.12
C9orf3-221ENST00000489562 INF2Q27J81 1249 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 MYSM1Q5VVJ2 828 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 PCNX4Q63HM2 1172 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 ATL3Q6DD88 541 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 MOXD1Q6UVY6 613 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 MSL3Q8N5Y2 521 aaKnown RBP15.82■□□□□ 0.12
C9orf3-221ENST00000489562 ZNF296Q8WUU4 475 aaPredicted RBP15.82■□□□□ 0.12
C9orf3-221ENST00000489562 CRYGNQ8WXF5 182 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 USP6NLQ92738 828 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 PGBD1Q96JS3 809 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 APBA2Q99767 749 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 PDCD2LQ9BRP1 358 aa15.82■□□□□ 0.12
C9orf3-221ENST00000489562 COBLO75128 1261 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 STAM2O75886 525 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 XRCC5P13010 732 aaKnown RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 EIF2AK2P19525 551 aaKnown RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 CTGFP29279 349 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 CCND2P30279 289 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 PRMT2P55345 433 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 PGM5Q15124 567 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 EARS2Q5JPH6 523 aaKnown RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 FOXD4L5Q5VV16 416 aaPredicted RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 CD99L2Q8TCZ2 262 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 FOXD4L4Q8WXT5 416 aaPredicted RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 ZNF396Q96N95 335 aaPredicted RBP15.81■□□□□ 0.12
C9orf3-221ENST00000489562 ARHGAP39Q9C0H5 1083 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 GJD2Q9UKL4 321 aa15.81■□□□□ 0.12
C9orf3-221ENST00000489562 SOWAHBA6NEL2 793 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 FAM205CA6NFA0 338 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 NR3C2P08235 984 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 EDNRBP24530 442 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 CIITAP33076 1130 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 MAMDC4Q6UXC1 1216 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 TRMT44Q8IYL2 757 aaKnown RBP15.8■□□□□ 0.12
C9orf3-221ENST00000489562 MORC4Q8TE76 937 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 FGD4Q96M96 766 aa15.8■□□□□ 0.12
C9orf3-221ENST00000489562 ASTN1O14525 1302 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 SYNGAP1Q96PV0 1343 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 BMP15O95972 392 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 PDE4DQ08499 809 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 STXBP2Q15833 593 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 LETM2Q2VYF4 491 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 TTC38Q5R3I4 469 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 PPP4R3AQ6IN85 833 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 NIPA1Q7RTP0 329 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 VSIG10LQ86VR7 867 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 MAML3Q96JK9 1138 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 PURBQ96QR8 312 aaKnown RBP15.79■□□□□ 0.12
C9orf3-221ENST00000489562 SRRDQ9UH36 339 aa15.79■□□□□ 0.12
C9orf3-221ENST00000489562 CYP3A7-CYP3A51PA0A087WV96 503 aa15.78■□□□□ 0.12
C9orf3-221ENST00000489562 EIF3JO75822 258 aaKnown RBP15.78■□□□□ 0.12
C9orf3-221ENST00000489562 ECM2O94769 699 aaPredicted RBP15.78■□□□□ 0.12
C9orf3-221ENST00000489562 CYP3A7P24462 503 aa15.78■□□□□ 0.12
C9orf3-221ENST00000489562 ZNF76P36508 570 aa15.78■□□□□ 0.12
C9orf3-221ENST00000489562 UBXN2AP68543 259 aa15.78■□□□□ 0.12
C9orf3-221ENST00000489562 SETQ01105 290 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms