RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	FILIP1L	Q4L180	1135 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	COBLL1	Q53SF7	1204 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	NAALADL2	Q58DX5	795 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	KRT79	Q5XKE5	535 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	CNNM4	Q6P4Q7	775 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	SLFN12	Q8IYM2	578 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	KCTD17	Q8N5Z5	321 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	SAMD3	Q8N6K7	520 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	ANKRD20A12P	Q8NF67	263 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	NOC3L	Q8WTT2	800 aa	Known RBP	12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	CACTIN	Q8WUQ7	758 aa	Known RBP	12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	DHTKD1	Q96HY7	919 aa	Predicted RBP	12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	VCPKMT	Q9H867	229 aa		12.19	□□□□□ -0.46
ITSN1-231	ENST00000489261	PVALEF	A0A1B0GWK0	134 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261		A0A1W2PRG0	241 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	EGFR	P00533	1210 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	TUBB4A	P04350	444 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	FMR1	Q06787	632 aa	Known RBP eCLIP	12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	RRP1B	Q14684	758 aa	Known RBP	12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	TPD52L1	Q16890	204 aa	Predicted RBP	12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	CCDC144B	Q3MJ40	725 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	SV2B	Q7L1I2	683 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	SAMD7	Q7Z3H4	446 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	FILIP1	Q7Z7B0	1213 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	VSTM4	Q8IW00	320 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	CCDC112	Q8NEF3	446 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	CDK5RAP3	Q96JB5	506 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	MTR	Q99707	1265 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	ANO3	Q9BYT9	981 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	NT5C3A	Q9H0P0	336 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	EHMT1	Q9H9B1	1298 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	PRR12	Q9ULL5	1215 aa		12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	MRPL11	Q9Y3B7	192 aa	Known RBP	12.18	□□□□□ -0.46
ITSN1-231	ENST00000489261	KDM3A	Q9Y4C1	1321 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	LRRC10B	A6NIK2	292 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	SPDYE3	A6NKU9	549 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	MEIS2	O14770	477 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	CCP110	O43303	1012 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	EDIL3	O43854	480 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	CYP3A4	P08684	503 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	SLURP2	P0DP57	97 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	ATP1A3	P13637	1013 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	PLCG1	P19174	1290 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	SFPQ	P23246	707 aa	Known RBP eCLIP	12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	CIITA	P33076	1130 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	JAG1	P78504	1218 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	PAK1	Q13153	545 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	PSMD2	Q13200	908 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	NR1I3	Q14994	352 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	UBE2S	Q16763	222 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261		Q4G0T1	1027 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	HYI	Q5T013	277 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	TMC6	Q7Z403	805 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	POTED	Q86YR6	584 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	FAM20A	Q96MK3	541 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	TMEM39B	Q9GZU3	492 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	BLZF1	Q9H2G9	400 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	PYCARD	Q9ULZ3	195 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	PCDHA12	Q9UN75	941 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	RABGAP1	Q9Y3P9	1069 aa		12.17	□□□□□ -0.46
ITSN1-231	ENST00000489261	ABCB11	O95342	1321 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	SYNRG	Q9UMZ2	1314 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261		A0A1B0GTH6	734 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	BICDL2	A1A5D9	508 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	RASSF10	A6NK89	507 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	TRAF5	O00463	557 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	KLRC4	O43908	158 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	CTNND1	O60716	968 aa	Known RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	TDP2	O95551	362 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	FDX1	P10109	184 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	SKIL	P12757	684 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	CDC25A	P30304	524 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	SREBF1	P36956	1147 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	RASA3	Q14644	834 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	KIF4B	Q2VIQ3	1234 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	KMT5B	Q4FZB7	885 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	CDKAL1	Q5VV42	579 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	CST9	Q5W186	159 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	DCAF15	Q66K64	600 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	ADSSL1	Q8N142	457 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	GIMAP8	Q8ND71	665 aa	Predicted RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	CRYGN	Q8WXF5	182 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	LPAR1	Q92633	364 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	PRIMPOL	Q96LW4	560 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	MMTAG2	Q9BU76	263 aa	Known RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	TRIM9	Q9C026	710 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	DEFB129	Q9H1M3	183 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	RANBP17	Q9H2T7	1088 aa	Known RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	LIMA1	Q9UHB6	759 aa	Known RBP	12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	PCNT	O95613	3336 aa		12.16	□□□□□ -0.46
ITSN1-231	ENST00000489261	PP2D1	A8MPX8	630 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	PHF20L1	A8MW92	1017 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L15	C9J2P7	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L13	C9JLJ4	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L11	C9JVI0	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L18	D6R9N7	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L22	D6RA61	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L17	D6RBQ6	530 aa		12.15	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms