RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 PRKAG2Q9UGJ0 569 aa16.5■□□□□ 0.23
BRCA1-218ENST00000489037 DDX49Q9Y6V7 483 aaKnown RBP16.5■□□□□ 0.23
BRCA1-218ENST00000489037 CCDC196A0A1B0GTZ2 297 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 GOLGA8AA7E2F4 631 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 GOLGA8BA8MQT2 603 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 NKRFO15226 690 aaKnown RBP eCLIP16.49■□□□□ 0.23
BRCA1-218ENST00000489037 CPA1P15085 419 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 SMPD1P17405 629 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 EIF2AK2P19525 551 aaKnown RBP16.49■□□□□ 0.23
BRCA1-218ENST00000489037 RPS6KB1P23443 525 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 EDNRBP24530 442 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 RCAN1P53805 252 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 RTP1P59025 263 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 GHRHRQ02643 423 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 DUSP28Q4G0W2 176 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 BRDTQ58F21 947 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-218ENST00000489037 CMTR1Q8N1G2 835 aaKnown RBP16.49■□□□□ 0.23
BRCA1-218ENST00000489037 STARD7Q9NQZ5 370 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 GNEQ9Y223 722 aaKnown RBP16.49■□□□□ 0.23
BRCA1-218ENST00000489037 ATP11BQ9Y2G3 1177 aa16.49■□□□□ 0.23
BRCA1-218ENST00000489037 A0A1W2PQ45 241 aaPredicted RBP16.48■□□□□ 0.23
BRCA1-218ENST00000489037 A0A1W2PQY0 241 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 RBM47A0AV96 593 aaKnown RBP16.48■□□□□ 0.23
BRCA1-218ENST00000489037 ADCY6O43306 1168 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 ASGR1P07306 291 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 HOXA13P31271 388 aaPredicted RBP16.48■□□□□ 0.23
BRCA1-218ENST00000489037 TTLL4Q14679 1199 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 FCHSD1Q86WN1 690 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 SMARCC2Q8TAQ2 1214 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 BRF1Q92994 677 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 PXMP2Q9NR77 195 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 COL20A1Q9P218 1284 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 BRPF3Q9ULD4 1205 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 ZMYND8Q9ULU4 1186 aaPredicted RBP16.48■□□□□ 0.23
BRCA1-218ENST00000489037 CYP46A1Q9Y6A2 500 aa16.48■□□□□ 0.23
BRCA1-218ENST00000489037 MYH7BA7E2Y1 1941 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 OPLAHO14841 1288 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 EIF3JO75822 258 aaKnown RBP16.47■□□□□ 0.23
BRCA1-218ENST00000489037 NR3C2P08235 984 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 TXNP10599 105 aaKnown RBP16.47■□□□□ 0.23
BRCA1-218ENST00000489037 METAP2P50579 478 aaKnown RBP eCLIP16.47■□□□□ 0.23
BRCA1-218ENST00000489037 APOBRQ0VD83 1088 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 FSCN1Q16658 493 aaKnown RBP16.47■□□□□ 0.23
BRCA1-218ENST00000489037 C1orf53Q5VUE5 145 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 RUFY3Q7L099 469 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 OR6J1Q8NGC5 347 aa16.47■□□□□ 0.23
BRCA1-218ENST00000489037 ELP1O95163 1332 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 MYADML2A6NDP7 307 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 CABYRO75952 493 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 MYCLP12524 364 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-218ENST00000489037 SYN1P17600 705 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 CPT1AP50416 773 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 NKX3-2P78367 333 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 BEX3Q00994 111 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 SNX17Q15036 470 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 TRIM60Q495X7 471 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 CHRDL2Q6WN34 429 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 SEPT14Q6ZU15 432 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 FBXL16Q8N461 479 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 TM6SF1Q9BZW5 370 aa16.46■□□□□ 0.23
BRCA1-218ENST00000489037 CCND2P30279 289 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 CCSAPQ6IQ19 270 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-218ENST00000489037 HEATR3Q7Z4Q2 680 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 LBHD1Q9BQE6 289 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-218ENST00000489037 PDCD2LQ9BRP1 358 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 PSTPIP2Q9H939 334 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 ZSWIM6Q9HCJ5 1215 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 POLR3EQ9NVU0 708 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 MROH7Q68CQ1 1323 aa16.45■□□□□ 0.22
BRCA1-218ENST00000489037 A0A0U1RQG5 324 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 hCG_1642624A0A1W2PR95 340 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 DCDC2CA8MYV0 355 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 hCG_1984214I3L0E3 225 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 IRX5P78411 483 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 AKAP17AQ02040 695 aaKnown RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 PGM5Q15124 567 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 KCNV1Q6PIU1 500 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 ZNF713Q8N859 430 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 PRDM5Q9NQX1 630 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 COLQQ9Y215 455 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 MRVI1Q9Y6F6 885 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 V9GY48 417 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-218ENST00000489037 CNTNAP5Q8WYK1 1306 aa16.44■□□□□ 0.22
BRCA1-218ENST00000489037 PIK3CDO00329 1044 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 CTAGE5O15320 804 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 KPNA6O60684 536 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 PQBP1O60828 265 aaKnown RBP16.43■□□□□ 0.22
BRCA1-218ENST00000489037 GH1P01241 217 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 NAPAP54920 295 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 TLE2Q04725 743 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 CXCL17Q6UXB2 119 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 VSIG10LQ86VR7 867 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 SEZ6LQ9BYH1 1024 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 AGXT2Q9BYV1 514 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 EHMT1Q9H9B1 1298 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 PDRG1Q9NUG6 133 aa16.43■□□□□ 0.22
BRCA1-218ENST00000489037 RBM27Q9P2N5 1060 aaKnown RBP16.43■□□□□ 0.22
BRCA1-218ENST00000489037 SPDYE3A6NKU9 549 aa16.42■□□□□ 0.22
BRCA1-218ENST00000489037 TLR3O15455 904 aaKnown RBP16.42■□□□□ 0.22
BRCA1-218ENST00000489037 STAM2O75886 525 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms