RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 CCDC136Q96JN2 1154 aa16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 TMEM87BQ96K49 555 aa16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 RMDN3Q96TC7 470 aa16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 RIOX1Q9H6W3 641 aa16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 PCDHA1Q9Y5I3 950 aa16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 BAZ2BQ9UIF8 2168 aaKnown RBP16.03■□□□□ 0.16
SPTLC1-207ENST00000488921 PRC1O43663 620 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 HSD17B4P51659 736 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 GHRHRQ02643 423 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 FPGSQ05932 587 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 STXBP2Q15833 593 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 ARHGEF16Q5VV41 709 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 CREB3L3Q68CJ9 461 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 FAM126BQ8IXS8 530 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 ZNF654Q8IZM8 581 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 SLC43A3Q8NBI5 491 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 CTCFLQ8NI51 663 aaPredicted RBP16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 LY9Q9HBG7 655 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 SENP2Q9HC62 589 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 TBX21Q9UL17 535 aa16.02■□□□□ 0.16
SPTLC1-207ENST00000488921 SCN10AQ9Y5Y9 1956 aa16.02■□□□□ 0.15
SPTLC1-207ENST00000488921 PNMA6FA0A0J9YX94 578 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 CCDC69A6NI79 296 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 CDC45O75419 566 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 TIMP1P01033 207 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 TXNP10599 105 aaKnown RBP16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 ITGA7Q13683 1181 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 NECTIN1Q15223 517 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 NFXL1Q6ZNB6 911 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 TBC1D5Q92609 795 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 TAAR1Q96RJ0 339 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 PIGSQ96S52 555 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 GPHNQ9NQX3 736 aaPredicted RBP16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 COL20A1Q9P218 1284 aa16.01■□□□□ 0.15
SPTLC1-207ENST00000488921 MYH7BA7E2Y1 1941 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 KPNA6O60684 536 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 PPP1R11O60927 126 aaPredicted RBP16■□□□□ 0.15
SPTLC1-207ENST00000488921 CALM1P0DP23 149 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 CALM2P0DP24 149 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 CALM3P0DP25 149 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 PTGS1P23219 599 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 ITGB8P26012 769 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 LIFRP42702 1097 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 GNAQP50148 359 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 TMEM63BQ5T3F8 832 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 LZTS2Q9BRK4 669 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 MTG1Q9BT17 334 aaPredicted RBP16■□□□□ 0.15
SPTLC1-207ENST00000488921 SPZ1Q9BXG8 430 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 PXMP2Q9NR77 195 aa16■□□□□ 0.15
SPTLC1-207ENST00000488921 SH2B2O14492 632 aaPredicted RBP15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 OPLAHO14841 1288 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 CYTH3O43739 400 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 CD4P01730 458 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 MYL3P08590 195 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 EIF2AK2P19525 551 aaKnown RBP15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 SMARCA1P28370 1054 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 PURAQ00577 322 aaKnown RBP15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 PPIGQ13427 754 aaKnown RBP eCLIP15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 SHHQ15465 462 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 MFSD5Q6N075 450 aa15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 SEC63Q9UGP8 760 aaKnown RBP15.99■□□□□ 0.15
SPTLC1-207ENST00000488921 A6NJR5 290 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 GCOM1H8Y6P7 765 aaPredicted RBP15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 EIF3JO75822 258 aaKnown RBP15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 GH1P01241 217 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 NR3C2P08235 984 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 POLR2MP0CAP2 368 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 C9orf50Q5SZB4 431 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 SEPT14Q6ZU15 432 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 SKAP1Q86WV1 359 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 TMEM199Q8N511 208 aa15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 RRP36Q96EU6 259 aaKnown RBP15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 RNPC3Q96LT9 517 aaKnown RBP15.98■□□□□ 0.15
SPTLC1-207ENST00000488921 TANC1Q9C0D5 1861 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 ARIH2O95376 493 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 PSMC6P62333 389 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 KRT32Q14532 448 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 SLC35G1Q2M3R5 365 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 CCDC62Q6P9F0 684 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 KCNV1Q6PIU1 500 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 DEFB123Q8N688 67 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 PDCD2LQ9BRP1 358 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 MYL10Q9BUA6 226 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 PPP1R12CQ9BZL4 782 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 SLC12A7Q9Y666 1083 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 MRVI1Q9Y6F6 885 aa15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 LAMA2P24043 3122 aaKnown RBP15.97■□□□□ 0.15
SPTLC1-207ENST00000488921 GRIN2DO15399 1336 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 B4GALT4O60513 344 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 SUPT20HL2P0C7V6 817 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 CCND2P30279 289 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 HOXA13P31271 388 aaPredicted RBP15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 SMAD3P84022 425 aaKnown RBP15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 ERICH6BQ5W0A0 696 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 FAM109BQ6ICB4 259 aaPredicted RBP15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 PSRC1Q6PGN9 363 aaPredicted RBP15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 SYNE3Q6ZMZ3 975 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 SGMS1Q86VZ5 419 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 COPS5Q92905 334 aa15.96■□□□□ 0.15
SPTLC1-207ENST00000488921 NEK1Q96PY6 1258 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms