RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 TRIM43BA6NCK2 446 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 PRPF3O43395 683 aaKnown RBP12.33□□□□□ -0.44
TOP3B-216ENST00000487485 PPFIA3O75145 1194 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 FCER1AP12319 257 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 CYBAP13498 195 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 AKAP17AQ02040 695 aaKnown RBP12.33□□□□□ -0.44
TOP3B-216ENST00000487485 TRAF1Q13077 416 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 TRIM60Q495X7 471 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 MUM1L1Q5H9M0 696 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 TRIM43Q96BQ3 446 aaPredicted RBP12.33□□□□□ -0.44
TOP3B-216ENST00000487485 MMP19Q99542 508 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 SLC26A6Q9BXS9 759 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 ACAD9Q9H845 621 aa12.33□□□□□ -0.44
TOP3B-216ENST00000487485 SH2B1Q9NRF2 756 aaPredicted RBP12.33□□□□□ -0.44
TOP3B-216ENST00000487485 CDKL5O76039 1030 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 MYCNP04198 464 aaPredicted RBP12.32□□□□□ -0.44
TOP3B-216ENST00000487485 SMAD3P84022 425 aaKnown RBP12.32□□□□□ -0.44
TOP3B-216ENST00000487485 SSRP1Q08945 709 aaKnown RBP12.32□□□□□ -0.44
TOP3B-216ENST00000487485 KCTD2Q14681 263 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 CCDC83Q8IWF9 413 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 TRIM22Q8IYM9 498 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 ANKRD35Q8N283 1001 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 ARRDC4Q8NCT1 418 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 CLEC4DQ8WXI8 215 aa12.32□□□□□ -0.44
TOP3B-216ENST00000487485 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
TOP3B-216ENST00000487485 MRPL11Q9Y3B7 192 aaKnown RBP12.32□□□□□ -0.44
TOP3B-216ENST00000487485 NFIBO00712 420 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 DTNBO60941 627 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 CTDNEP1O95476 244 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 FOSL2P15408 326 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 ADORA2AP29274 412 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 ADCYAP1R1P41586 468 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 ST3GAL1Q11201 340 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 SNX17Q15036 470 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 PKN1Q16512 942 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 PFKFB3Q16875 520 aaPredicted RBP12.31□□□□□ -0.44
TOP3B-216ENST00000487485 PRAMEF19Q5SWL8 479 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 NSMFQ6X4W1 530 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.31□□□□□ -0.44
TOP3B-216ENST00000487485 HEATR3Q7Z4Q2 680 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 DPP9Q86TI2 863 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 ABRAQ8N0Z2 381 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.44
TOP3B-216ENST00000487485 FERMT2Q96AC1 680 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 DDX11Q96FC9 970 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 TMX3Q96JJ7 454 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 PDLIM7Q9NR12 457 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 ZNF236Q9UL36 1845 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 MUC3AQ02505 3323 aa12.31□□□□□ -0.44
TOP3B-216ENST00000487485 PTPDC1A2A3K4 754 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 KBTBD13C9JR72 458 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 COBLO75128 1261 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 DEXIO95424 95 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 PGK2P07205 417 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 SCG2P13521 617 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 ITGB8P26012 769 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 EPHB4P54760 987 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 TLE2Q04725 743 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 OLFML2BQ68BL8 750 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 WWC2Q6AWC2 1192 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 RNF207Q6ZRF8 634 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 MCF2L2Q86YR7 1114 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 RGS22Q8NE09 1264 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 TBC1D5Q92609 795 aa12.3□□□□□ -0.44
TOP3B-216ENST00000487485 A1CFQ9NQ94 594 aaKnown RBP12.3□□□□□ -0.44
TOP3B-216ENST00000487485 LCTP09848 1927 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 hCG_1984214I3L0E3 225 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 OPLAHO14841 1288 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 SEPT4O43236 478 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 CFBP00751 764 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 BAATQ14032 418 aaPredicted RBP12.29□□□□□ -0.44
TOP3B-216ENST00000487485 LRRC41Q15345 812 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 ZNF713Q8N859 430 aaPredicted RBP12.29□□□□□ -0.44
TOP3B-216ENST00000487485 USP38Q8NB14 1042 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 NSUN7Q8NE18 718 aaKnown RBP12.29□□□□□ -0.44
TOP3B-216ENST00000487485 SYMPKQ92797 1274 aaKnown RBP12.29□□□□□ -0.44
TOP3B-216ENST00000487485 SNX21Q969T3 373 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 LLPHQ9BRT6 129 aaKnown RBP12.29□□□□□ -0.44
TOP3B-216ENST00000487485 MAF1Q9H063 256 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 BARHL2Q9NY43 387 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 SLC5A4Q9NY91 659 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 CYP39A1Q9NYL5 469 aa12.29□□□□□ -0.44
TOP3B-216ENST00000487485 BDP1A6H8Y1 2624 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 DNAJC25-GNG10A0A024R161 153 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 STXBP3O00186 592 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 JAK2O60674 1132 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 FDPSP14324 419 aaKnown RBP12.28□□□□□ -0.44
TOP3B-216ENST00000487485 CALML3P27482 149 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 NAPAP54920 295 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 RPS6P62753 249 aaKnown RBP12.28□□□□□ -0.44
TOP3B-216ENST00000487485 GRIN2CQ14957 1233 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 ZNF792Q3KQV3 632 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 TYW1BQ6NUM6 668 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 SAMD3Q8N6K7 520 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 RNPC3Q96LT9 517 aaKnown RBP12.28□□□□□ -0.44
TOP3B-216ENST00000487485 MAP3K20Q9NYL2 800 aaKnown RBP12.28□□□□□ -0.44
TOP3B-216ENST00000487485 ORC3Q9UBD5 711 aaPredicted RBP12.28□□□□□ -0.44
TOP3B-216ENST00000487485 STK36Q9NRP7 1315 aa12.28□□□□□ -0.44
TOP3B-216ENST00000487485 SMCO2A6NFE2 343 aa12.27□□□□□ -0.45
TOP3B-216ENST00000487485 GCOM1H8Y6P7 765 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms