RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 CCDC196A0A1B0GTZ2 297 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 GCOM1H8Y6P7 765 aaPredicted RBP20.79■□□□□ 0.92
HDAC6-225ENST00000483506 PIK3CDO00329 1044 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 POLR2MP0CAP2 368 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 SMPD1P17405 629 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 EEPD1Q7L9B9 569 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 PXMP2Q9NR77 195 aa20.79■□□□□ 0.92
HDAC6-225ENST00000483506 FRMPD4Q14CM0 1322 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 KIAA1217Q5T5P2 1943 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 CTAGE5O15320 804 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 C8orf34Q49A92 452 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 DUSP28Q4G0W2 176 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 CCDC82Q8N4S0 544 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 DPF3Q92784 378 aa20.78■□□□□ 0.92
HDAC6-225ENST00000483506 UPF3BQ9BZI7 483 aaKnown RBP20.78■□□□□ 0.92
HDAC6-225ENST00000483506 SENP6Q9GZR1 1112 aaPredicted RBP20.78■□□□□ 0.92
HDAC6-225ENST00000483506 SEC24BO95487 1268 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 HOXA13P31271 388 aaPredicted RBP20.77■□□□□ 0.92
HDAC6-225ENST00000483506 SNX17Q15036 470 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 ARHGEF16Q5VV41 709 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 TLK2Q86UE8 772 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 TEX2Q8IWB9 1127 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 SCFD2Q8WU76 684 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 PDCD2LQ9BRP1 358 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 ALDH8A1Q9H2A2 487 aaPredicted RBP20.77■□□□□ 0.92
HDAC6-225ENST00000483506 SPC25Q9HBM1 224 aa20.77■□□□□ 0.92
HDAC6-225ENST00000483506 hCG_1642624A0A1W2PR95 340 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 MYADML2A6NDP7 307 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 MOXD2PA6NHM9 499 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 hCG_1984214I3L0E3 225 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 EVI5O60447 810 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 NR3C2P08235 984 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 PDIA3P30101 505 aaKnown RBP20.76■□□□□ 0.91
HDAC6-225ENST00000483506 ADD1P35611 737 aaKnown RBP20.76■□□□□ 0.91
HDAC6-225ENST00000483506 STXBP2Q15833 593 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 LRRC26Q2I0M4 334 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 C1orf53Q5VUE5 145 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 PPP1R18Q6NYC8 613 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 ZNF713Q8N859 430 aaPredicted RBP20.76■□□□□ 0.91
HDAC6-225ENST00000483506 WDR11Q9BZH6 1224 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 NR2E3Q9Y5X4 410 aa20.76■□□□□ 0.91
HDAC6-225ENST00000483506 MEIS2O14770 477 aa20.75■□□□□ 0.91
HDAC6-225ENST00000483506 NKRFO15226 690 aaKnown RBP eCLIP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 C6orf222P0C671 652 aaPredicted RBP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 EIF2AK2P19525 551 aaKnown RBP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 NTRK3Q16288 839 aa20.75■□□□□ 0.91
HDAC6-225ENST00000483506 WWC2Q6AWC2 1192 aa20.75■□□□□ 0.91
HDAC6-225ENST00000483506 PCSK9Q8NBP7 692 aaKnown RBP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 ZNF274Q96GC6 653 aaPredicted RBP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 PDRG1Q9NUG6 133 aa20.75■□□□□ 0.91
HDAC6-225ENST00000483506 NAP1L2Q9ULW6 460 aaPredicted RBP20.75■□□□□ 0.91
HDAC6-225ENST00000483506 A0A1W2PQ45 241 aaPredicted RBP20.74■□□□□ 0.91
HDAC6-225ENST00000483506 A0A1W2PQY0 241 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 EIF3JO75822 258 aaKnown RBP20.74■□□□□ 0.91
HDAC6-225ENST00000483506 MYCNP04198 464 aaPredicted RBP20.74■□□□□ 0.91
HDAC6-225ENST00000483506 ACLYP53396 1101 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 PGM5Q15124 567 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 KCNA10Q16322 511 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 TMEM63BQ5T3F8 832 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 CCDC62Q6P9F0 684 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 VSIG10LQ86VR7 867 aa20.74■□□□□ 0.91
HDAC6-225ENST00000483506 RBM27Q9P2N5 1060 aaKnown RBP20.74■□□□□ 0.91
HDAC6-225ENST00000483506 V9GY48 417 aaPredicted RBP20.74■□□□□ 0.91
HDAC6-225ENST00000483506 H0YGN5 161 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 IRX5P78411 483 aaPredicted RBP20.73■□□□□ 0.91
HDAC6-225ENST00000483506 TTLL4Q14679 1199 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 USP17L6PQ6QN14 398 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 SLC39A5Q6ZMH5 540 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 NOL8Q76FK4 1167 aaKnown RBP20.73■□□□□ 0.91
HDAC6-225ENST00000483506 HEATR3Q7Z4Q2 680 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 GPKOWQ92917 476 aaPredicted RBP eCLIP20.73■□□□□ 0.91
HDAC6-225ENST00000483506 CUL5Q93034 780 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 AP5M1Q9H0R1 490 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 PSTPIP2Q9H939 334 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 BARHL2Q9NY43 387 aa20.73■□□□□ 0.91
HDAC6-225ENST00000483506 STXBP3O00186 592 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 DYNC1LI2O43237 492 aaPredicted RBP20.72■□□□□ 0.91
HDAC6-225ENST00000483506 PRPF3O43395 683 aaKnown RBP20.72■□□□□ 0.91
HDAC6-225ENST00000483506 IFNAR1P17181 557 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 PTGS1P23219 599 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 FSCN1Q16658 493 aaKnown RBP20.72■□□□□ 0.91
HDAC6-225ENST00000483506 PFKFB3Q16875 520 aaPredicted RBP20.72■□□□□ 0.91
HDAC6-225ENST00000483506 GNASQ5JWF2 1037 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 TYW1BQ6NUM6 668 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 FCHSD1Q86WN1 690 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 IL31RAQ8NI17 732 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 SMARCC2Q8TAQ2 1214 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 FERMT2Q96AC1 680 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 ELP1O95163 1332 aa20.72■□□□□ 0.91
HDAC6-225ENST00000483506 RGS20O76081 388 aa20.71■□□□□ 0.91
HDAC6-225ENST00000483506 ARIH2O95376 493 aa20.71■□□□□ 0.91
HDAC6-225ENST00000483506 ASGR1P07306 291 aa20.71■□□□□ 0.91
HDAC6-225ENST00000483506 CCND2P30279 289 aa20.71■□□□□ 0.91
HDAC6-225ENST00000483506 ATN1P54259 1190 aaPredicted RBP20.71■□□□□ 0.91
HDAC6-225ENST00000483506 C7orf61Q8IZ16 206 aa20.71■□□□□ 0.91
HDAC6-225ENST00000483506 RNF26Q9BY78 433 aaPredicted RBP20.71■□□□□ 0.91
HDAC6-225ENST00000483506 STAM2O75886 525 aa20.7■□□□□ 0.9
HDAC6-225ENST00000483506 TXNP10599 105 aaKnown RBP20.7■□□□□ 0.9
HDAC6-225ENST00000483506 SCG2P13521 617 aa20.7■□□□□ 0.9
HDAC6-225ENST00000483506 RTP1P59025 263 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms