RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 RHBDL3P58872 404 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 LRRC63Q05C16 580 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 KRT79Q5XKE5 535 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 CCDC70Q6NSX1 233 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 PPP1R18Q6NYC8 613 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 KIAA0895Q8NCT3 520 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 CAGE1Q8TC20 777 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 CERKQ8TCT0 537 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 C8orf37Q96NL8 207 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 TSG101Q99816 390 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 SLC39A2Q9NP94 309 aa17.1■□□□□ 0.33
C9orf3-218ENST00000482056 PDHBP11177 359 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 PSMD2Q13200 908 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 GRB10Q13322 594 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 CASP8Q14790 479 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 MAN2A1Q16706 1144 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 VWA3BQ502W6 1294 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 GUF1Q8N442 669 aaKnown RBP17.09■□□□□ 0.33
C9orf3-218ENST00000482056 SECISBP2LQ93073 1101 aaKnown RBP17.09■□□□□ 0.33
C9orf3-218ENST00000482056 UBA5Q9GZZ9 404 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 FOCADQ5VW36 1801 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 RASSF10A6NK89 507 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 TFRCP02786 760 aaKnown RBP17.09■□□□□ 0.33
C9orf3-218ENST00000482056 ADRA2BP18089 450 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 KLK7P49862 253 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 PRR5LQ6MZQ0 368 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 AMIGO3Q86WK7 504 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 SEMA6BQ9H3T3 888 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 TMEM260Q9NX78 707 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 HDAC6Q9UBN7 1215 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 ADAM21Q9UKJ8 722 aa17.09■□□□□ 0.33
C9orf3-218ENST00000482056 BBOX1O75936 387 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 HNRNPH3P31942 346 aaKnown RBP17.08■□□□□ 0.33
C9orf3-218ENST00000482056 FOXR2Q6PJQ5 311 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 FNBP4Q8N3X1 1017 aaPredicted RBP17.08■□□□□ 0.33
C9orf3-218ENST00000482056 TRIM58Q8NG06 486 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 FAM71BQ8TC56 605 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 RAD54LQ92698 747 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 PURBQ96QR8 312 aaKnown RBP17.08■□□□□ 0.33
C9orf3-218ENST00000482056 NDST4Q9H3R1 872 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 VIPAS39Q9H9C1 493 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 MED4Q9NPJ6 270 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 RIC8AQ9NPQ8 531 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 BLOC1S4Q9NUP1 217 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 MTMR4Q9NYA4 1195 aa17.08■□□□□ 0.33
C9orf3-218ENST00000482056 LTBP4Q8N2S1 1624 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 FRMPD2Q68DX3 1309 aaPredicted RBP17.08■□□□□ 0.32
C9orf3-218ENST00000482056 MYMKA6NI61 221 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 TACC1O75410 805 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 IDEP14735 1019 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 SEPT2Q15019 361 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 CCDC96Q2M329 555 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 CRY2Q49AN0 593 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 NEK11Q8NG66 645 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 SNX29Q8TEQ0 813 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 EEF2KMTQ96G04 330 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 PNMA5Q96PV4 448 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 DEF6Q9H4E7 631 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 VPS18Q9P253 973 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 PLAGL2Q9UPG8 496 aa17.08■□□□□ 0.32
C9orf3-218ENST00000482056 FAM196AQ6ZSG2 479 aa17.07■□□□□ 0.32
C9orf3-218ENST00000482056 CCDC102AQ96A19 550 aa17.07■□□□□ 0.32
C9orf3-218ENST00000482056 MMS19Q96T76 1030 aa17.07■□□□□ 0.32
C9orf3-218ENST00000482056 NAP1L4Q99733 375 aaKnown RBP17.07■□□□□ 0.32
C9orf3-218ENST00000482056 JADE2Q9NQC1 790 aa17.07■□□□□ 0.32
C9orf3-218ENST00000482056 PODXL2Q9NZ53 605 aa17.07■□□□□ 0.32
C9orf3-218ENST00000482056 CWC15Q9P013 229 aaKnown RBP17.07■□□□□ 0.32
C9orf3-218ENST00000482056 PNMA6FA0A0J9YX94 578 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 LMAN1P49257 510 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 PPP4R3AQ6IN85 833 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 DYMQ7RTS9 669 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 PROM2Q8N271 834 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 COA7Q96BR5 231 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 CAPZA3Q96KX2 299 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 ALS2CR12Q96Q35 445 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 IFIH1Q9BYX4 1025 aaKnown RBP17.06■□□□□ 0.32
C9orf3-218ENST00000482056 EDEM3Q9BZQ6 932 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 LACRTQ9GZZ8 138 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 JRKLQ9Y4A0 524 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 MACROD2A1Z1Q3 448 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 SLC37A4O43826 429 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 MARCH6O60337 910 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 HNRNPH2P55795 449 aaKnown RBP17.06■□□□□ 0.32
C9orf3-218ENST00000482056 MUM1L1Q5H9M0 696 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 ARHGAP27Q6ZUM4 889 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 SLC51AQ86UW1 340 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 C2CD5Q86YS7 1000 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 HPS3Q969F9 1004 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 MMRN2Q9H8L6 949 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 SWAP70Q9UH65 585 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 TFR2Q9UP52 801 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 SIK3Q9Y2K2 1263 aa17.06■□□□□ 0.32
C9orf3-218ENST00000482056 RCCD1A6NED2 376 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 TOM1O60784 492 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 TDP2O95551 362 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 TTLL1O95922 423 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 SNHG28P0DPA3 235 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 GCFC2P16383 781 aaKnown RBP17.05■□□□□ 0.32
C9orf3-218ENST00000482056 TNNI2P48788 182 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 CYP27A1Q02318 531 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms