RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 C2orf49Q9BVC5 232 aaPredicted RBP7.8□□□□□ -1.16
USP48-208ENST00000479177 ZCCHC2Q9C0B9 1178 aaKnown RBP7.8□□□□□ -1.16
USP48-208ENST00000479177 SUV39H2Q9H5I1 410 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 LY9Q9HBG7 655 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 ZNF287Q9HBT7 754 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 SH2B1Q9NRF2 756 aaPredicted RBP7.8□□□□□ -1.16
USP48-208ENST00000479177 ADARB2Q9NS39 739 aaKnown RBP7.8□□□□□ -1.16
USP48-208ENST00000479177 ZSWIM5Q9P217 1185 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 SWAP70Q9UH65 585 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 PGAP2Q9UHJ9 254 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 HACL1Q9UJ83 578 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 TPCN1Q9ULQ1 816 aa7.8□□□□□ -1.16
USP48-208ENST00000479177 ANGEL1Q9UNK9 670 aaKnown RBP7.8□□□□□ -1.16
USP48-208ENST00000479177 TNKSO95271 1327 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 GLTPD2A6NH11 291 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 IFIT3O14879 490 aaKnown RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 HIRAP54198 1017 aaPredicted RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 FGD1P98174 961 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 APOBRQ0VD83 1088 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 TNFAIP1Q13829 316 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 SART3Q15020 963 aaKnown RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 SEC23AQ15436 765 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 ME3Q16798 604 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 TMEM67Q5HYA8 995 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 FAM47AQ5JRC9 791 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 EFHC2Q5JST6 749 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 SGMS1Q86VZ5 419 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 APOBEC3FQ8IUX4 373 aaKnown RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 C1orf216Q8TAB5 229 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 ZSCAN31Q96LW9 406 aaPredicted RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 CSRNP1Q96S65 589 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 UBAC1Q9BSL1 405 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 PHACTR1Q9C0D0 580 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 TMEM39BQ9GZU3 492 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 MKNK2Q9HBH9 465 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 NDFIP2Q9NV92 336 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 GGA3Q9NZ52 723 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 PI4KBQ9UBF8 816 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 NID2Q14112 1375 aa7.79□□□□□ -1.16
USP48-208ENST00000479177 POLR2AP24928 1970 aaKnown RBP7.79□□□□□ -1.16
USP48-208ENST00000479177 PITPNM2Q9BZ72 1349 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 IGKV6D-41A0A0C4DH26 115 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 KLF18A0A0U1RQI7 1052 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 TSPY2A6NKD2 308 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 GOLGA8BA8MQT2 603 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 NMT2O60551 498 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 PRMT3O60678 531 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 AKR1B1P15121 316 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 WEE1P30291 646 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 LIFRP42702 1097 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 TNNI2P48788 182 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 TFAP4Q01664 338 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ELOAQ14241 798 aaKnown RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 RASA3Q14644 834 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 WTAPQ15007 396 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ANGEL2Q5VTE6 544 aaKnown RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 LRRC69Q6ZNQ3 347 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 IQCA1Q86XH1 822 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ZSCAN29Q8IWY8 852 aaPredicted RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 CRACR2BQ8N4Y2 399 aaPredicted RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 ENAHQ8N8S7 591 aaPredicted RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 GTF3C6Q969F1 213 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 TEPSINQ96N21 525 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ZKSCAN3Q9BRR0 538 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 TCP11L1Q9NUJ3 509 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 HERC5Q9UII4 1024 aaKnown RBP7.78□□□□□ -1.16
USP48-208ENST00000479177 BRPF3Q9ULD4 1205 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 MKL2Q9ULH7 1088 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 SSC5DA1L4H1 1573 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 PAPPA2Q9BXP8 1791 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 MYH4Q9Y623 1939 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ATAD5Q96QE3 1844 aa7.78□□□□□ -1.16
USP48-208ENST00000479177 ERICH2A1L162 156 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 DCDC2BA2VCK2 349 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 PFKFB2O60825 505 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 TSPY3P0CV98 308 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 TSPY8P0CW00 308 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 IGFBP4P22692 258 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 PDIA3P30101 505 aaKnown RBP7.77□□□□□ -1.17
USP48-208ENST00000479177 NOVP48745 357 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 RCAN1P53805 252 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 CCDC178Q5BJE1 867 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 RCSD1Q6JBY9 416 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 TATDN1Q6P1N9 297 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 APOA5Q6Q788 366 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 LINC00114Q6XXX2 140 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 KRTAP1-3Q8IUG1 177 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 FOXP4Q8IVH2 680 aaPredicted RBP7.77□□□□□ -1.17
USP48-208ENST00000479177 CCDC83Q8IWF9 413 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 ALDH16A1Q8IZ83 802 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 ZNF444Q8N0Y2 327 aaPredicted RBP7.77□□□□□ -1.17
USP48-208ENST00000479177 NECAB1Q8N987 351 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 ZNF280CQ8ND82 737 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 ANKS1AQ92625 1134 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 ZNF274Q96GC6 653 aaPredicted RBP7.77□□□□□ -1.17
USP48-208ENST00000479177 INTS4Q96HW7 963 aaKnown RBP7.77□□□□□ -1.17
USP48-208ENST00000479177 HSH2DQ96JZ2 352 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 CCDC17Q96LX7 622 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 IL17RBQ9NRM6 502 aa7.77□□□□□ -1.17
USP48-208ENST00000479177 SCAF8Q9UPN6 1271 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms