RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 FOXP4Q8IVH2 680 aaPredicted RBP16.12■□□□□ 0.17
HDAC6-220ENST00000477528 FBXO38Q6PIJ6 1188 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 KRT26Q7Z3Y9 468 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 HOOK3Q86VS8 718 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 FAM178BQ8IXR5 827 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 IWS1Q96ST2 819 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 ABHD10Q9NUJ1 306 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 ANKRD62A6NC57 917 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 GOLGA6CA6NDK9 693 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 EBAG9O00559 213 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 GOLGA6DP0CG33 693 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 NR2F2P24468 414 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 DNAJC21Q5F1R6 531 aaKnown RBP16.12■□□□□ 0.17
HDAC6-220ENST00000477528 ATRIPQ8WXE1 791 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 IFT74Q96LB3 600 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 FNBP1Q96RU3 617 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 TEKT3Q9BXF9 490 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 STMN4Q9H169 189 aaPredicted RBP16.12■□□□□ 0.17
HDAC6-220ENST00000477528 NDST4Q9H3R1 872 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 GOLGA6AQ9NYA3 693 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 GDF11O95390 407 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 CDC37Q16543 378 aaPredicted RBP16.12■□□□□ 0.17
HDAC6-220ENST00000477528 SMIM5Q71RC9 77 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 SPZ1Q9BXG8 430 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 ATP6V0A2Q9Y487 856 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 BCL9O00512 1426 aa16.12■□□□□ 0.17
HDAC6-220ENST00000477528 ENC1O14682 589 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 TEX33O43247 280 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 WDR44Q5JSH3 913 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 NHEJ1Q9H9Q4 299 aaPredicted RBP16.11■□□□□ 0.17
HDAC6-220ENST00000477528 HOMER2Q9NSB8 354 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 TCRBV5S4A2TA0A5A2 114 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 TRIM49BA6NDI0 452 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 ZBTB5O15062 677 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 CYP2J2P51589 502 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 CLCN6P51797 869 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 TXNRD1Q16881 649 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 UBL4BQ8N7F7 174 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 HOOK2Q96ED9 719 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 MASTLQ96GX5 879 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 PCDHA6Q9UN73 950 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 PCDHA8Q9Y5H6 950 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 SLIT3O75094 1523 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 CCDC151A5D8V7 595 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 BUB1O43683 1085 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 SPOPO43791 374 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 PLA2G4BP0C869 781 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 FMR1Q06787 632 aaKnown RBP eCLIP16.11■□□□□ 0.172e-6■■■■□ 22.5
HDAC6-220ENST00000477528 TNFAIP1Q13829 316 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 EXOC3L4Q17RC7 722 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 SYDE2Q5VT97 1194 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 KLHL7Q8IXQ5 586 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 SPICE1Q8N0Z3 855 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 LRRC45Q96CN5 670 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 ANO3Q9BYT9 981 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.11■□□□□ 0.17
HDAC6-220ENST00000477528 CTTNBP2NLQ9P2B4 639 aa16.11■□□□□ 0.17
HDAC6-220ENST00000477528 CNTNAP5Q8WYK1 1306 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 PVALEFA0A1B0GWK0 134 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 GAP43P17677 238 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 LRCH2Q5VUJ6 765 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 E4F1Q66K89 784 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 ZFP91Q96JP5 570 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 BZW2Q9Y6E2 419 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 GJA3Q9Y6H8 435 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 SALL1Q9NSC2 1324 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 EEF2P13639 858 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 KRT5P13647 590 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 DPYDQ12882 1025 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 U2AF1L4Q8WU68 220 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 DCAF4Q8WV16 495 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 UBLCP1Q8WVY7 318 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 MAP3K14Q99558 947 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 TMOD4Q9NZQ9 345 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 LARSQ9P2J5 1176 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 CACNA1FO60840 1977 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 A6NNZ2 444 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 TROAPQ12815 778 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 BIRC3Q13489 604 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 CLUL1Q15846 466 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 LONRF2Q1L5Z9 754 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 TUBB8Q3ZCM7 444 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 SLC27A3Q5K4L6 730 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 USP49Q70CQ1 688 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 MCF2L2Q86YR7 1114 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 EMILIN3Q9NT22 766 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 HPSEQ9Y251 543 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 UTP11Q9Y3A2 253 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 A0A1B0GTH6 734 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 ACTN4O43707 911 aaKnown RBP16.1■□□□□ 0.17
HDAC6-220ENST00000477528 ZEB2O60315 1214 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 PPFIA1Q13136 1202 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 AP3B2Q13367 1082 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 KCNB1Q14721 858 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 TMEM179Q6ZVK1 233 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 ANKRD13CQ8N6S4 541 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 PARD6BQ9BYG5 372 aa16.1■□□□□ 0.17
HDAC6-220ENST00000477528 PP2D1A8MPX8 630 aa16.09■□□□□ 0.17
HDAC6-220ENST00000477528 SEC31AO94979 1220 aaKnown RBP16.09■□□□□ 0.17
HDAC6-220ENST00000477528 RASSF7Q02833 373 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms