RNA–Protein interactions for RNA: ENST00000476777.5

BRCA1-213, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-213ENST00000476777 STX8Q9UNK0 236 aa13.47□□□□□ -0.25
BRCA1-213ENST00000476777 COL4A4P53420 1690 aaPredicted RBP13.47□□□□□ -0.25
BRCA1-213ENST00000476777 C5orf42Q9H799 3197 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 ZNF318Q5VUA4 2279 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 NKRFO15226 690 aaKnown RBP eCLIP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 NMT2O60551 498 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 KPNA6O60684 536 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 SLC3A2P08195 630 aaKnown RBP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 KCNJ6P48051 423 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 WDR5P61964 334 aaKnown RBP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 PPP2R5BQ15173 497 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 LRRFIP1Q32MZ4 808 aaKnown RBP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 TSHZ3Q63HK5 1081 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 ALYREFQ86V81 257 aaKnown RBP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 COPS5Q92905 334 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 CTAGE1Q96RT6 745 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 NACAP1Q9BZK3 213 aa13.46□□□□□ -0.25
BRCA1-213ENST00000476777 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.46□□□□□ -0.25
BRCA1-213ENST00000476777 RAD50Q92878 1312 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.45□□□□□ -0.26
BRCA1-213ENST00000476777 PTPDC1A2A3K4 754 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 PRR33A8MZF0 331 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 EDNRBP24530 442 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 NOVP48745 357 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 DEFB103AP81534 67 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 HNRNPUQ00839 825 aaKnown RBP eCLIP13.45□□□□□ -0.26
BRCA1-213ENST00000476777 PTGISQ16647 500 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 TTBK2Q6IQ55 1244 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 BTNL9Q6UXG8 535 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 SLC30A10Q6XR72 485 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 FAM178BQ8IXR5 827 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 GJD3Q8N144 294 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 CAGE1Q8TC20 777 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 SCFD2Q8WU76 684 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 CLEC4DQ8WXI8 215 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 SEC62Q99442 399 aaKnown RBP13.45□□□□□ -0.26
BRCA1-213ENST00000476777 NAPBQ9H115 298 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 UBE2ZQ9H832 354 aaPredicted RBP13.45□□□□□ -0.26
BRCA1-213ENST00000476777 SUGCTQ9HAC7 445 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 INCENPQ9NQS7 918 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 MTMR7Q9Y216 660 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 NOD1Q9Y239 953 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 CACNA1HO95180 2353 aa13.45□□□□□ -0.26
BRCA1-213ENST00000476777 TSPY2A6NKD2 308 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 CALML3P27482 149 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 SLC16A2P36021 539 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 ERVK-21P61565 698 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 CCDC96Q2M329 555 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 LEXMQ3ZCV2 418 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 AFAP1L1Q8TED9 768 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 DCAF4Q8WV16 495 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 ZBED2Q9BTP6 218 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 MTUS1Q9ULD2 1270 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 ZDBF2Q9HCK1 2354 aa13.44□□□□□ -0.26
BRCA1-213ENST00000476777 ARIH2O95376 493 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 GJB5O95377 273 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 CXCL10P02778 98 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 TXNP10599 105 aaKnown RBP13.43□□□□□ -0.26
BRCA1-213ENST00000476777 SELPP16109 830 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 PDE4DQ08499 809 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 TCTN1Q2MV58 587 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 SYDE2Q5VT97 1194 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 GDF6Q6KF10 455 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-213ENST00000476777 RNF207Q6ZRF8 634 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 SESTD1Q86VW0 696 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 CCDC155Q8N6L0 562 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-213ENST00000476777 DHX38Q92620 1227 aaKnown RBP13.43□□□□□ -0.26
BRCA1-213ENST00000476777 GPATCH3Q96I76 525 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 TGS1Q96RS0 853 aaKnown RBP13.43□□□□□ -0.26
BRCA1-213ENST00000476777 RAD9AQ99638 391 aa13.43□□□□□ -0.26
BRCA1-213ENST00000476777 LINC01553A4QN01 128 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 FOXP2O15409 715 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 NBNO60934 754 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 IL9P15248 144 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 KCNA5P22460 613 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 CHMP4BP1P59074 171 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 RPS6P62753 249 aaKnown RBP13.42□□□□□ -0.26
BRCA1-213ENST00000476777 CTDSPL2Q05D32 466 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 RBL2Q08999 1139 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 CNKSR3Q6P9H4 555 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 LRRC8DQ7L1W4 858 aa13.42□□□□□ -0.26
BRCA1-213ENST00000476777 CHMP4BQ9H444 224 aaKnown RBP13.42□□□□□ -0.26
BRCA1-213ENST00000476777 SIP14410 1827 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 ABHD14A-ACY1A0A1B0GW23 586 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 RBAK-RBAKDNI3L0D1 243 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 RANBP6O60518 1105 aaKnown RBP13.41□□□□□ -0.26
BRCA1-213ENST00000476777 PARNO95453 639 aaKnown RBP13.41□□□□□ -0.26
BRCA1-213ENST00000476777 ALADP13716 330 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 SSTR3P32745 418 aaPredicted RBP13.41□□□□□ -0.26
BRCA1-213ENST00000476777 CCDC62Q6P9F0 684 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 DNERQ8NFT8 737 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 AFG1LQ8WV93 481 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 KAT2BQ92831 832 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 MPHOSPH6Q99547 160 aaKnown RBP13.41□□□□□ -0.26
BRCA1-213ENST00000476777 CFAP54Q96N23 3096 aa13.41□□□□□ -0.26
BRCA1-213ENST00000476777 FRMPD2Q68DX3 1309 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-213ENST00000476777 GRXCR2A6NFK2 248 aa13.4□□□□□ -0.26
BRCA1-213ENST00000476777 MMP3P08254 477 aa13.4□□□□□ -0.26
BRCA1-213ENST00000476777 CKBP12277 381 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms