RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 SYTL5Q8TDW5 730 aaPredicted RBP17.49■□□□□ 0.39
LIMS1-212ENST00000474038 IL17RAQ96F46 866 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 SEC63Q9UGP8 760 aaKnown RBP17.49■□□□□ 0.39
LIMS1-212ENST00000474038 GTF3C3Q9Y5Q9 886 aa17.49■□□□□ 0.39
LIMS1-212ENST00000474038 CNTNAP5Q8WYK1 1306 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 LOC102724159A0A0B4J2E5 919 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 MYADML2A6NDP7 307 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 ADD1P35611 737 aaKnown RBP17.48■□□□□ 0.39
LIMS1-212ENST00000474038 METAP2P50579 478 aaKnown RBP eCLIP17.48■□□□□ 0.39
LIMS1-212ENST00000474038 HSD17B4P51659 736 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 SNX17Q15036 470 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 PPP2R5BQ15173 497 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 PWP2Q15269 919 aaKnown RBP17.48■□□□□ 0.39
LIMS1-212ENST00000474038 CCDC144BQ3MJ40 725 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 DNERQ8NFT8 737 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 TAAR1Q96RJ0 339 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 PDRG1Q9NUG6 133 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 MYH7BA7E2Y1 1941 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 NID2Q14112 1375 aa17.48■□□□□ 0.39
LIMS1-212ENST00000474038 A0A1W2PQ45 241 aaPredicted RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 A0A1W2PQY0 241 aa17.47■□□□□ 0.39
LIMS1-212ENST00000474038 SOX1O00570 391 aaPredicted RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 DUSP11O75319 330 aaKnown RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 PDIA3P30101 505 aaKnown RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 KLHDC9Q8NEP7 349 aa17.47■□□□□ 0.39
LIMS1-212ENST00000474038 UBE2OQ9C0C9 1292 aaKnown RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 MAP3K20Q9NYL2 800 aaKnown RBP17.47■□□□□ 0.39
LIMS1-212ENST00000474038 CCDC196A0A1B0GTZ2 297 aa17.46■□□□□ 0.39
LIMS1-212ENST00000474038 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-212ENST00000474038 EDNRBP24530 442 aa17.46■□□□□ 0.39
LIMS1-212ENST00000474038 HOXA13P31271 388 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-212ENST00000474038 EEPD1Q7L9B9 569 aa17.46■□□□□ 0.39
LIMS1-212ENST00000474038 FBXO16Q8IX29 292 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-212ENST00000474038 SAMD3Q8N6K7 520 aa17.46■□□□□ 0.39
LIMS1-212ENST00000474038 LARP6Q9BRS8 491 aaKnown RBP17.46■□□□□ 0.39
LIMS1-212ENST00000474038 VTA1Q9NP79 307 aa17.46■□□□□ 0.39
LIMS1-212ENST00000474038 PRDM5Q9NQX1 630 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-212ENST00000474038 LTBP2Q14767 1821 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 GCOM1H8Y6P7 765 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 C6orf222P0C671 652 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 POLR2MP0CAP2 368 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 PTGS1P23219 599 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 ACLYP53396 1101 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 KCNA10Q16322 511 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 CCSAPQ6IQ19 270 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 TAPT1Q6NXT6 567 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 TDHQ8IZJ6 230 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 NSUN6Q8TEA1 469 aaKnown RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 LRCH3Q96II8 777 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 RMDN3Q96TC7 470 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 TSEN34Q9BSV6 310 aaKnown RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 PDGFCQ9NRA1 345 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 PRKAG2Q9UGJ0 569 aa17.45■□□□□ 0.38
LIMS1-212ENST00000474038 V9GY48 417 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-212ENST00000474038 B4DLN1 442 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 MRPL12P52815 198 aaKnown RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 CCT2P78371 535 aaKnown RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 TLE2Q04725 743 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 PDE4DQ08499 809 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 C1orf53Q5VUE5 145 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 SH3RF1Q7Z6J0 888 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 GPKOWQ92917 476 aaPredicted RBP eCLIP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 ZNF274Q96GC6 653 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 MPHOSPH6Q99547 160 aaKnown RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 LBHD1Q9BQE6 289 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 UPF3AQ9H1J1 476 aaKnown RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 ALDH8A1Q9H2A2 487 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 NCOA5Q9HCD5 579 aaKnown RBP17.44■□□□□ 0.38
LIMS1-212ENST00000474038 PDLIM7Q9NR12 457 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 PXMP2Q9NR77 195 aa17.44■□□□□ 0.38
LIMS1-212ENST00000474038 PQBP1O60828 265 aaKnown RBP17.43■□□□□ 0.38
LIMS1-212ENST00000474038 EIF2AK2P19525 551 aaKnown RBP17.43■□□□□ 0.38
LIMS1-212ENST00000474038 CST5P28325 142 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-212ENST00000474038 GJA9P57773 515 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 TNFAIP2Q03169 654 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 NTRK3Q16288 839 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 ARHGEF16Q5VV41 709 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 WWC2Q6AWC2 1192 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 NOL8Q76FK4 1167 aaKnown RBP17.43■□□□□ 0.38
LIMS1-212ENST00000474038 HEATR3Q7Z4Q2 680 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 IWS1Q96ST2 819 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 SPC25Q9HBM1 224 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 STARD7Q9NQZ5 370 aa17.43■□□□□ 0.38
LIMS1-212ENST00000474038 RBM47A0AV96 593 aaKnown RBP17.42■□□□□ 0.38
LIMS1-212ENST00000474038 TRIM43BA6NCK2 446 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 MOXD2PA6NHM9 499 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 MEIS2O14770 477 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 CTAGE5O15320 804 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 BEX3Q00994 111 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 TMEM63BQ5T3F8 832 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 IQSEC1Q6DN90 963 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 USP17L6PQ6QN14 398 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 FCHSD1Q86WN1 690 aa17.42■□□□□ 0.38
LIMS1-212ENST00000474038 TRIM43Q96BQ3 446 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-212ENST00000474038 GNEQ9Y223 722 aaKnown RBP17.42■□□□□ 0.38
LIMS1-212ENST00000474038 DOCK5Q9H7D0 1870 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 PIK3CDO00329 1044 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 ASGR1P07306 291 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 NR3C2P08235 984 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 IFNAR1P17181 557 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms