RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	EIF2AK2	P19525	551 aa	Known RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	GJA9	P57773	515 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	CHMP4BP1	P59074	171 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	TTLL4	Q14679	1199 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	FSCN1	Q16658	493 aa	Known RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	SEPT14	Q6ZU15	432 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	RGS22	Q8NE09	1264 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	SCFD2	Q8WU76	684 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	CUL5	Q93034	780 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	TAAR1	Q96RJ0	339 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	LZTS2	Q9BRK4	669 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	ASTN1	O14525	1302 aa		13.34	□□□□□ -0.27
CPNE1-222	ENST00000473373	DOCK5	Q9H7D0	1870 aa		13.33	□□□□□ -0.27
CPNE1-222	ENST00000473373		A0A0U1RQG5	324 aa	Predicted RBP	13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	ADCY6	O43306	1168 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	MYL3	P08590	195 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	HMGB1	P09429	215 aa	Known RBP	13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	CLTB	P09497	229 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	POLR2M	P0CAP2	368 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	RAG1	P15918	1043 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	CPT1A	P50416	773 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	TLE2	Q04725	743 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	TROAP	Q12815	778 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	STXBP2	Q15833	593 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	FCHSD1	Q86WN1	690 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	CCDC82	Q8N4S0	544 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	KLHDC9	Q8NEP7	349 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	TBC1D5	Q92609	795 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	TCEANC2	Q96MN5	208 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	KATNBL1	Q9H079	304 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	UPF3A	Q9H1J1	476 aa	Known RBP	13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	TMEM39A	Q9NV64	488 aa		13.33	□□□□□ -0.28
CPNE1-222	ENST00000473373	NKRF	O15226	690 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	TXN	P10599	105 aa	Known RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	CST5	P28325	142 aa	Predicted RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	HOXA13	P31271	388 aa	Predicted RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	LIFR	P42702	1097 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	IRX5	P78411	483 aa	Predicted RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	DUSP28	Q4G0W2	176 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	ERICH6B	Q5W0A0	696 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	TAPT1	Q6NXT6	567 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	CXCL17	Q6UXB2	119 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	DHX32	Q7L7V1	743 aa	Known RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	SMARCC2	Q8TAQ2	1214 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	JAKMIP1	Q96N16	626 aa	Known RBP	13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	GUCD1	Q96NT3	240 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	MAP3K14	Q99558	947 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	MAF1	Q9H063	256 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	RIOX1	Q9H6W3	641 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	KAT6A	Q92794	2004 aa		13.32	□□□□□ -0.28
CPNE1-222	ENST00000473373	CABYR	O75952	493 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	FAM47C	Q5HY64	1035 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	BLOC1S2	Q6QNY1	142 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	CMTR1	Q8N1G2	835 aa	Known RBP	13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	MORC4	Q8TE76	937 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	IWS1	Q96ST2	819 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	RNF39	Q9H2S5	420 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	PXMP2	Q9NR77	195 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	POLR3E	Q9NVU0	708 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	RBM28	Q9NW13	759 aa	Known RBP	13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	MAP3K20	Q9NYL2	800 aa	Known RBP	13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	GNE	Q9Y223	722 aa	Known RBP	13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373		Q9Y3F1	56 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	MRVI1	Q9Y6F6	885 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	ELP1	O95163	1332 aa		13.31	□□□□□ -0.28
CPNE1-222	ENST00000473373	KLF18	A0A0U1RQI7	1052 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	GOLGA8A	A7E2F4	631 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	GOLGA8B	A8MQT2	603 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	ZBTB43	O43298	467 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	CYTH3	O43739	400 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	PPP1R11	O60927	126 aa	Predicted RBP	13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	PLEKHA8P1	O95397	391 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	NR3C2	P08235	984 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	PTGS1	P23219	599 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	PSMA5	P28066	241 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	CCND2	P30279	289 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	RTN1	Q16799	776 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	SAMD3	Q8N6K7	520 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	FANCB	Q8NB91	859 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	BAD	Q92934	168 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	MTMR8	Q96EF0	704 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	SPZ1	Q9BXG8	430 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	PDLIM7	Q9NR12	457 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	COL20A1	Q9P218	1284 aa		13.3	□□□□□ -0.28
CPNE1-222	ENST00000473373	CUL9	Q8IWT3	2517 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	ARVCF	O00192	962 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	GH1	P01241	217 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	HSD17B4	P51659	736 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	ITGA7	Q13683	1181 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	SNX17	Q15036	470 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	ADCK5	Q3MIX3	580 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	C1orf53	Q5VUE5	145 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	HEATR3	Q7Z4Q2	680 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	RASEF	Q8IZ41	740 aa		13.29	□□□□□ -0.28
CPNE1-222	ENST00000473373	COPS5	Q92905	334 aa		13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms