RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SPDYE16A6NNV3 312 aaPredicted RBP14.51□□□□□ -0.09
VPS13D-205ENST00000473099 SLC26A4O43511 780 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 CAVIN2O95810 425 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 FXR2P51116 673 aaKnown RBP eCLIP14.51□□□□□ -0.093e-10■■□□□ 12.2
VPS13D-205ENST00000473099 IRX3P78415 501 aaPredicted RBP14.51□□□□□ -0.09
VPS13D-205ENST00000473099 GRIN1Q05586 938 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 PDIA5Q14554 519 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 Q4G0T1 1027 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 CHADLQ6NUI6 762 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 SASS6Q6UVJ0 657 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 MOB2Q70IA6 237 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 POTEDQ86YR6 584 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 SLFN12Q8IYM2 578 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 CNNM3Q8NE01 707 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 GTF3C2Q8WUA4 911 aaPredicted RBP14.51□□□□□ -0.09
VPS13D-205ENST00000473099 SYMPKQ92797 1274 aaKnown RBP14.51□□□□□ -0.09
VPS13D-205ENST00000473099 MTMR9Q96QG7 549 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 CCSER1Q9C0I3 900 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 TMEM60Q9H2L4 133 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 ZNF408Q9H9D4 720 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 ZNF214Q9UL59 606 aaPredicted RBP14.51□□□□□ -0.09
VPS13D-205ENST00000473099 MRVI1Q9Y6F6 885 aa14.51□□□□□ -0.09
VPS13D-205ENST00000473099 TRAF5O00463 557 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 MARCH6O60337 910 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 TDP2O95551 362 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 OSBPP22059 807 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 HOXA13P31271 388 aaPredicted RBP14.5□□□□□ -0.09
VPS13D-205ENST00000473099 COPB2P35606 906 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 UBA7P41226 1012 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 MRE11P49959 708 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 ZRSR1Q15695 479 aaKnown RBP14.5□□□□□ -0.09
VPS13D-205ENST00000473099 CAMK4Q16566 473 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 SNRNP48Q6IEG0 339 aaKnown RBP14.5□□□□□ -0.09
VPS13D-205ENST00000473099 KRBA2Q6ZNG9 492 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 CLEC4DQ8WXI8 215 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 TRERF1Q96PN7 1200 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 RNF146Q9NTX7 359 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 CCDC39Q9UFE4 941 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 FBXO40Q9UH90 709 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 PNMA3Q9UL41 463 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 SLC45A1Q9Y2W3 748 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 STK24Q9Y6E0 443 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 PLXNA1Q9UIW2 1896 aa14.5□□□□□ -0.09
VPS13D-205ENST00000473099 FRMPD4Q14CM0 1322 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 POLR2DO15514 142 aaKnown RBP14.49□□□□□ -0.09
VPS13D-205ENST00000473099 EDIL3O43854 480 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 CELF2O95319 508 aaKnown RBP14.49□□□□□ -0.09
VPS13D-205ENST00000473099 ZBTB48P10074 688 aaPredicted RBP14.49□□□□□ -0.09
VPS13D-205ENST00000473099 ZNF76P36508 570 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 SPECC1Q5M775 1068 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 TREML2Q5T2D2 321 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 FCHSD1Q86WN1 690 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 CEP57L1Q8IYX8 460 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 IGSF22Q8N9C0 903 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 IQUBQ8NA54 791 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 CHST13Q8NET6 341 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 FAM20AQ96MK3 541 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 FUCA2Q9BTY2 467 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 CUEDC2Q9H467 287 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 ACAD9Q9H845 621 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 MAGEF1Q9HAY2 307 aa14.49□□□□□ -0.09
VPS13D-205ENST00000473099 MYH9P35579 1960 aaKnown RBP14.49□□□□□ -0.09
VPS13D-205ENST00000473099 PLXNB2O15031 1838 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 RPTORQ8N122 1335 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 NFIBO00712 420 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 SLC37A4O43826 429 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 SLFN14P0C7P3 912 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 CETPP11597 493 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 STAT3P40763 770 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 GTF2A2P52657 109 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 SETQ01105 290 aaPredicted RBP14.48□□□□□ -0.09
VPS13D-205ENST00000473099 TMEM132BQ14DG7 1078 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 IL17AQ16552 155 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 XRRA1Q6P2D8 792 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 RNF207Q6ZRF8 634 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 NIPA1Q7RTP0 329 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 EPSTI1Q96J88 318 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 WNK4Q96J92 1243 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 KCNMB3Q9NPA1 279 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.48□□□□□ -0.09
VPS13D-205ENST00000473099 KIAA1468Q9P260 1216 aa14.48□□□□□ -0.09
VPS13D-205ENST00000473099 TAL1P17542 331 aaPredicted RBP14.47□□□□□ -0.09
VPS13D-205ENST00000473099 TXKP42681 527 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 RPS6P62753 249 aaKnown RBP14.47□□□□□ -0.09
VPS13D-205ENST00000473099 HTRA3P83110 453 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 TYRO3Q06418 890 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 STX1AQ16623 288 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 LONRF3Q496Y0 759 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 MUM1L1Q5H9M0 696 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 GAS2L3Q86XJ1 694 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 RIOX2Q8IUF8 465 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 CKAP2LQ8IYA6 745 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 DNAJC5GQ8N7S2 189 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 SYTL5Q8TDW5 730 aaPredicted RBP14.47□□□□□ -0.09
VPS13D-205ENST00000473099 TBC1D5Q92609 795 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 CALML4Q96GE6 196 aa14.47□□□□□ -0.09
VPS13D-205ENST00000473099 P2RX7Q99572 595 aaKnown RBP14.47□□□□□ -0.09
VPS13D-205ENST00000473099 ASCC2Q9H1I8 757 aaPredicted RBP14.47□□□□□ -0.09
VPS13D-205ENST00000473099 TTC12Q9H892 705 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms