RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 CFBP00751 764 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 CALM1P0DP23 149 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 CALM2P0DP24 149 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 CALM3P0DP25 149 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 PTGS1P23219 599 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 GNAQP50148 359 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 FAAP100Q0VG06 881 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 PPP2R5BQ15173 497 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 LRIT3Q3SXY7 679 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 CXCL17Q6UXB2 119 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 SGMS1Q86VZ5 419 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 SLC43A3Q8NBI5 491 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 NEK1Q96PY6 1258 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 MYL10Q9BUA6 226 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 TMEM39AQ9NV64 488 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 MROH7Q68CQ1 1323 aa13.87□□□□□ -0.19
SYNE1-221ENST00000472563 EIF3JO75822 258 aaKnown RBP13.86□□□□□ -0.19
SYNE1-221ENST00000472563 TXNP10599 105 aaKnown RBP13.86□□□□□ -0.19
SYNE1-221ENST00000472563 CPT1AP50416 773 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 EXOSC10Q01780 885 aaKnown RBP13.86□□□□□ -0.19
SYNE1-221ENST00000472563 KRT32Q14532 448 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 TTLL4Q14679 1199 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 STXBP2Q15833 593 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 ARHGEF16Q5VV41 709 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 RASEFQ8IZ41 740 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 BADQ92934 168 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 PXMP2Q9NR77 195 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 SLC12A7Q9Y666 1083 aa13.86□□□□□ -0.19
SYNE1-221ENST00000472563 ZNFX1Q9P2E3 1918 aaKnown RBP13.86□□□□□ -0.19
SYNE1-221ENST00000472563 A6NJR5 290 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 GCOM1H8Y6P7 765 aaPredicted RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 SOX1O00570 391 aaPredicted RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 NR3C2P08235 984 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 POLR2MP0CAP2 368 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 RAG1P15918 1043 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 EIF2AK2P19525 551 aaKnown RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 BRDTQ58F21 947 aaPredicted RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 ERICH6BQ5W0A0 696 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 CCDC62Q6P9F0 684 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 DHX32Q7L7V1 743 aaKnown RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 OR6J1Q8NGC5 347 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 KCNB2Q92953 911 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 RRP36Q96EU6 259 aaKnown RBP13.85□□□□□ -0.19
SYNE1-221ENST00000472563 LRRC2Q9BYS8 371 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 POLR3EQ9NVU0 708 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 TBX21Q9UL17 535 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 GRIN2DO15399 1336 aa13.85□□□□□ -0.19
SYNE1-221ENST00000472563 PLXNA1Q9UIW2 1896 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 ALPK3Q96L96 1907 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 TLR3O15455 904 aaKnown RBP13.84□□□□□ -0.19
SYNE1-221ENST00000472563 KPNA6O60684 536 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 ARIH2O95376 493 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 HMGB1P09429 215 aaKnown RBP13.84□□□□□ -0.19
SYNE1-221ENST00000472563 ITGB8P26012 769 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 HOXA13P31271 388 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-221ENST00000472563 ITGA7Q13683 1181 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 SYNE3Q6ZMZ3 975 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 FAM126BQ8IXS8 530 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 SRBD1Q8N5C6 995 aaKnown RBP13.84□□□□□ -0.19
SYNE1-221ENST00000472563 FANCBQ8NB91 859 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 PDCD2LQ9BRP1 358 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 FRMPD3Q5JV73 1810 aa13.84□□□□□ -0.19
SYNE1-221ENST00000472563 PLEKHA8P1O95397 391 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 TIMP1P01033 207 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 CD4P01730 458 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 PURAQ00577 322 aaKnown RBP13.83□□□□□ -0.2
SYNE1-221ENST00000472563 ADCK5Q3MIX3 580 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 GPR153Q6NV75 609 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 SEPT14Q6ZU15 432 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 TMTC3Q6ZXV5 915 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 VSIG10LQ86VR7 867 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 PIBF1Q8WXW3 757 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 COPS5Q92905 334 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 MTG1Q9BT17 334 aaPredicted RBP13.83□□□□□ -0.2
SYNE1-221ENST00000472563 PPP4R2Q9NY27 417 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 SEC63Q9UGP8 760 aaKnown RBP13.83□□□□□ -0.2
SYNE1-221ENST00000472563 LAMA3Q16787 3333 aa13.83□□□□□ -0.2
SYNE1-221ENST00000472563 SMCHD1A6NHR9 2005 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 REC8O95072 547 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 GH1P01241 217 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 MYL3P08590 195 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 RXRAP19793 462 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 HSPA4P34932 840 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 PSMC6P62333 389 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 PGM5Q15124 567 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 APOA5Q6Q788 366 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 LRCH3Q96II8 777 aa13.82□□□□□ -0.2
SYNE1-221ENST00000472563 DDX41Q9UJV9 622 aaKnown RBP13.82□□□□□ -0.2
SYNE1-221ENST00000472563 PIK3CDO00329 1044 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 EPB41L2O43491 1005 aaKnown RBP13.81□□□□□ -0.2
SYNE1-221ENST00000472563 RGS20O76081 388 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 MYCLP12524 364 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-221ENST00000472563 FPGSQ05932 587 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 ARHGAP1Q07960 439 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 SHHQ15465 462 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 LY6KQ17RY6 165 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 C9orf50Q5SZB4 431 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 MFSD5Q6N075 450 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 KCNV1Q6PIU1 500 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 FCHSD1Q86WN1 690 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms