RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 STXBP2Q15833 593 aa23.06■■□□□ 1.28
NPHP4-206ENST00000468253 PFKFB3Q16875 520 aaPredicted RBP23.06■■□□□ 1.28
NPHP4-206ENST00000468253 CPLX2Q6PUV4 134 aaKnown RBP23.06■■□□□ 1.28
NPHP4-206ENST00000468253 RNF26Q9BY78 433 aaPredicted RBP23.06■■□□□ 1.28
NPHP4-206ENST00000468253 PFKFB2O60825 505 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 HOXA13P31271 388 aaPredicted RBP23.05■■□□□ 1.28
NPHP4-206ENST00000468253 AK2P54819 239 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 HEATR3Q7Z4Q2 680 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 RNF180Q86T96 592 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 VSIG10LQ86VR7 867 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 PAWRQ96IZ0 340 aaKnown RBP23.05■■□□□ 1.28
NPHP4-206ENST00000468253 KIF2CQ99661 725 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 XPNPEP3Q9NQH7 507 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 TPCN1Q9ULQ1 816 aa23.05■■□□□ 1.28
NPHP4-206ENST00000468253 CPLX1O14810 134 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 COL6A1P12109 1028 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 SCG2P13521 617 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 GJA9P57773 515 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 LRRC41Q15345 812 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 WWC2Q6AWC2 1192 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 PDCD2LQ9BRP1 358 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 LARP6Q9BRS8 491 aaKnown RBP23.04■■□□□ 1.28
NPHP4-206ENST00000468253 TSEN34Q9BSV6 310 aaKnown RBP23.04■■□□□ 1.28
NPHP4-206ENST00000468253 SLKQ9H2G2 1235 aaPredicted RBP23.04■■□□□ 1.28
NPHP4-206ENST00000468253 SPC25Q9HBM1 224 aa23.04■■□□□ 1.28
NPHP4-206ENST00000468253 NCOA5Q9HCD5 579 aaKnown RBP23.04■■□□□ 1.28
NPHP4-206ENST00000468253 GNEQ9Y223 722 aaKnown RBP23.04■■□□□ 1.28
NPHP4-206ENST00000468253 PLXNA1Q9UIW2 1896 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 STXBP3O00186 592 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 PKN1Q16512 942 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 ANO1Q5XXA6 986 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 XRRA1Q6P2D8 792 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 USP17L6PQ6QN14 398 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 EEPD1Q7L9B9 569 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 FCHSD1Q86WN1 690 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 FBXO16Q8IX29 292 aaPredicted RBP23.03■■□□□ 1.28
NPHP4-206ENST00000468253 KLHDC9Q8NEP7 349 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 SMARCC2Q8TAQ2 1214 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 SCFD2Q8WU76 684 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 WDR11Q9BZH6 1224 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 UPF3AQ9H1J1 476 aaKnown RBP23.03■■□□□ 1.28
NPHP4-206ENST00000468253 RIC8AQ9NPQ8 531 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 PDGFCQ9NRA1 345 aa23.03■■□□□ 1.28
NPHP4-206ENST00000468253 DDX49Q9Y6V7 483 aaKnown RBP23.03■■□□□ 1.28
NPHP4-206ENST00000468253 NKRFO15226 690 aaKnown RBP eCLIP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 ADAMTS4O75173 837 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 EIF2AK2P19525 551 aaKnown RBP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 ADCYAP1R1P41586 468 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 NAPAP54920 295 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 SSRP1Q08945 709 aaKnown RBP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 DUSP28Q4G0W2 176 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 TRIM22Q8IYM9 498 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 FAM177A1Q8N128 213 aaPredicted RBP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 CCDC12Q8WUD4 166 aaPredicted RBP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 GPKOWQ92917 476 aaPredicted RBP eCLIP23.02■■□□□ 1.28
NPHP4-206ENST00000468253 PHKBQ93100 1093 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 HTATIP2Q9BUP3 242 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 C11orf49Q9H6J7 331 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 FRMPD4Q14CM0 1322 aa23.02■■□□□ 1.28
NPHP4-206ENST00000468253 ESYT2A0FGR8 921 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 SMCO2A6NFE2 343 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 STAM2O75886 525 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 CDKL5O76039 1030 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 SMPD1P17405 629 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 CST5P28325 142 aaPredicted RBP23.01■■□□□ 1.27
NPHP4-206ENST00000468253 PGM5Q15124 567 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 SLC26A6Q9BXS9 759 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 SH3GLB2Q9NR46 395 aa23.01■■□□□ 1.27
NPHP4-206ENST00000468253 C11orf97A0A1B0GVM6 126 aaPredicted RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 KBTBD13C9JR72 458 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 ADCY6O43306 1168 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 PGK1P00558 417 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 FOSP01100 380 aaPredicted RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 CCND2P30279 289 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 SCRN1Q12765 414 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 STK3Q13188 491 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 TTLL4Q14679 1199 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 GJC2Q5T442 439 aaPredicted RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 MCTP2Q6DN12 878 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 CCSAPQ6IQ19 270 aaPredicted RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 TYW1BQ6NUM6 668 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 CCDC62Q6P9F0 684 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 KCNV1Q6PIU1 500 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 NOL8Q76FK4 1167 aaKnown RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 DIS3LQ8TF46 1054 aaKnown RBP23■■□□□ 1.27
NPHP4-206ENST00000468253 BACH2Q9BYV9 841 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 ZMYND12Q9H0C1 365 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 AP5M1Q9H0R1 490 aa23■■□□□ 1.27
NPHP4-206ENST00000468253 TGFB3P10600 412 aa22.99■■□□□ 1.27
NPHP4-206ENST00000468253 RABEP1Q15276 862 aa22.99■■□□□ 1.27
NPHP4-206ENST00000468253 PCSK9Q8NBP7 692 aaKnown RBP22.99■■□□□ 1.27
NPHP4-206ENST00000468253 LIMCH1Q9UPQ0 1083 aa22.99■■□□□ 1.27
NPHP4-206ENST00000468253 PHF24Q9UPV7 400 aa22.99■■□□□ 1.27
NPHP4-206ENST00000468253 MKI67P46013 3256 aaKnown RBP22.99■■□□□ 1.27
NPHP4-206ENST00000468253 SYNRGQ9UMZ2 1314 aa22.99■■□□□ 1.27
NPHP4-206ENST00000468253 DYNC1LI2O43237 492 aaPredicted RBP22.98■■□□□ 1.27
NPHP4-206ENST00000468253 DEXIO95424 95 aa22.98■■□□□ 1.27
NPHP4-206ENST00000468253 GNA11P29992 359 aa22.98■■□□□ 1.27
NPHP4-206ENST00000468253 ADCY7P51828 1080 aa22.98■■□□□ 1.27
NPHP4-206ENST00000468253 ME3Q16798 604 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms