RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 TMTC2Q8N394 836 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 DEFB123Q8N688 67 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 OR6J1Q8NGC5 347 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 TBC1D5Q92609 795 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 MAP3K14Q99558 947 aa22.16■■□□□ 1.14
COL7A1-207ENST00000467985 CFBP00751 764 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 TXNP10599 105 aaKnown RBP22.15■■□□□ 1.14
COL7A1-207ENST00000467985 PTGS1P23219 599 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 MCM5P33992 734 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 HSD17B4P51659 736 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 STXBP2Q15833 593 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 ARHGEF16Q5VV41 709 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 MFSD5Q6N075 450 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 TAAR1Q96RJ0 339 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 SENP2Q9HC62 589 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 ANO2Q9NQ90 1003 aa22.15■■□□□ 1.14
COL7A1-207ENST00000467985 GPHNQ9NQX3 736 aaPredicted RBP22.15■■□□□ 1.14
COL7A1-207ENST00000467985 SLC27A2O14975 620 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 PRC1O43663 620 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 KPNA6O60684 536 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 CD4P01730 458 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 C9orf50Q5SZB4 431 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 TMEM87BQ96K49 555 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 LY9Q9HBG7 655 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 COL20A1Q9P218 1284 aa22.14■■□□□ 1.13
COL7A1-207ENST00000467985 PNMA6FA0A0J9YX94 578 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 PPP1R11O60927 126 aaPredicted RBP22.13■■□□□ 1.13
COL7A1-207ENST00000467985 DDAH1O94760 285 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 KIF5BP33176 963 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 NECTIN1Q15223 517 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 RNF20Q5VTR2 975 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 CREB3L3Q68CJ9 461 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 FAM109BQ6ICB4 259 aaPredicted RBP22.13■■□□□ 1.13
COL7A1-207ENST00000467985 HOMER1Q86YM7 354 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 CTCFLQ8NI51 663 aaPredicted RBP22.13■■□□□ 1.13
COL7A1-207ENST00000467985 PIGSQ96S52 555 aa22.13■■□□□ 1.13
COL7A1-207ENST00000467985 GRIN2DO15399 1336 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 A6NJR5 290 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 OPLAHO14841 1288 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 EIF3JO75822 258 aaKnown RBP22.12■■□□□ 1.13
COL7A1-207ENST00000467985 PURAQ00577 322 aaKnown RBP22.12■■□□□ 1.13
COL7A1-207ENST00000467985 PPIGQ13427 754 aaKnown RBP eCLIP22.12■■□□□ 1.137e-7■■■■■ 30.1
COL7A1-207ENST00000467985 ZNF654Q8IZM8 581 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 TMEM199Q8N511 208 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 LZTS2Q9BRK4 669 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 MTG1Q9BT17 334 aaPredicted RBP22.12■■□□□ 1.13
COL7A1-207ENST00000467985 PXMP2Q9NR77 195 aa22.12■■□□□ 1.13
COL7A1-207ENST00000467985 CYTH3O43739 400 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 NR3C2P08235 984 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 MYL3P08590 195 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 EIF2AK2P19525 551 aaKnown RBP22.11■■□□□ 1.13
COL7A1-207ENST00000467985 SMARCA1P28370 1054 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 SLC35G1Q2M3R5 365 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 CCDC62Q6P9F0 684 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 NFXL1Q6ZNB6 911 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 RNPC3Q96LT9 517 aaKnown RBP22.11■■□□□ 1.13
COL7A1-207ENST00000467985 SPZ1Q9BXG8 430 aa22.11■■□□□ 1.13
COL7A1-207ENST00000467985 KIAA1217Q5T5P2 1943 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 CCDC69A6NI79 296 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 GCOM1H8Y6P7 765 aaPredicted RBP22.1■■□□□ 1.13
COL7A1-207ENST00000467985 POLR2MP0CAP2 368 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 CALM1P0DP23 149 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 CALM2P0DP24 149 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 CALM3P0DP25 149 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 LIFRP42702 1097 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 GNAQP50148 359 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 EPHB4P54760 987 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 PSMC6P62333 389 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 SMAD3P84022 425 aaKnown RBP22.1■■□□□ 1.13
COL7A1-207ENST00000467985 SEPT14Q6ZU15 432 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 CCDC136Q96JN2 1154 aa22.1■■□□□ 1.13
COL7A1-207ENST00000467985 BAZ2BQ9UIF8 2168 aaKnown RBP22.1■■□□□ 1.13
COL7A1-207ENST00000467985 SH2B2O14492 632 aaPredicted RBP22.09■■□□□ 1.13
COL7A1-207ENST00000467985 CDC45O75419 566 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 ARIH2O95376 493 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 GH1P01241 217 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 SUPT20HL2P0C7V6 817 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 Q7L0L9 218 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 COPS5Q92905 334 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 RRP36Q96EU6 259 aaKnown RBP22.09■■□□□ 1.13
COL7A1-207ENST00000467985 PPP1R12CQ9BZL4 782 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 ALDH8A1Q9H2A2 487 aaPredicted RBP22.09■■□□□ 1.13
COL7A1-207ENST00000467985 HIPK3Q9H422 1215 aa22.09■■□□□ 1.13
COL7A1-207ENST00000467985 KCNV1Q6PIU1 500 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 SKAP1Q86WV1 359 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 PDCD2LQ9BRP1 358 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 TRPV6Q9H1D0 765 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 MTMR10Q9NXD2 777 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 PPP4R2Q9NY27 417 aa22.08■■□□□ 1.13
COL7A1-207ENST00000467985 A0A0C4DFX4 3053 aa22.08■■□□□ 1.12
COL7A1-207ENST00000467985 B4GALT4O60513 344 aa22.07■■□□□ 1.12
COL7A1-207ENST00000467985 HOXA13P31271 388 aaPredicted RBP22.07■■□□□ 1.12
COL7A1-207ENST00000467985 LY6KQ17RY6 165 aa22.07■■□□□ 1.12
COL7A1-207ENST00000467985 NFRKBQ6P4R8 1299 aa22.07■■□□□ 1.12
COL7A1-207ENST00000467985 EMID1Q96A84 441 aaPredicted RBP22.07■■□□□ 1.12
COL7A1-207ENST00000467985 MYL10Q9BUA6 226 aa22.07■■□□□ 1.12
COL7A1-207ENST00000467985 SEC63Q9UGP8 760 aaKnown RBP22.07■■□□□ 1.12
COL7A1-207ENST00000467985 SCN10AQ9Y5Y9 1956 aa22.07■■□□□ 1.12
COL7A1-207ENST00000467985 CSF2RAP15509 400 aa22.06■■□□□ 1.12
COL7A1-207ENST00000467985 CYP2C18P33260 490 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms