RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KSR1Q8IVT5 923 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 MB21D1Q8N884 522 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 OSBP2Q969R2 916 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 LRRD1A4D1F6 860 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 RPSAP08865 295 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 MMS22LQ6ZRQ5 1243 aa20.74■□□□□ 0.91
CCDC88B-204ENST00000463837 NIM1KQ8IY84 436 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 CEP120Q8N960 986 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 H0YCG3 227 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 KRT31Q15323 416 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 AFPP02771 609 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 SESN3P58005 492 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 SLMAPQ14BN4 828 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 RPAINQ86UA6 219 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 GCFC2P16383 781 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 E2F5Q15329 346 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 PPP4R1Q8TF05 950 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 PUS3Q9BZE2 481 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 EFCAB6Q5THR3 1501 aa20.73■□□□□ 0.91
CCDC88B-204ENST00000463837 APBA3O96018 575 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 FOSP01100 380 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 IFNAR2P48551 515 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 GYS2P54840 703 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 MRPS9P82933 396 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 AOC3Q16853 763 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 USH1GQ495M9 461 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 TEKT1Q969V4 418 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 ZBED4O75132 1171 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 IFNB1P01574 187 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 SETSIPP0DME0 302 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 GAP43P17677 238 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 PTPREP23469 700 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 OTUD6AQ7L8S5 288 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 TADA2BQ86TJ2 420 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 FAM178BQ8IXR5 827 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 MOCS3O95396 460 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 EIF4A3P38919 411 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 HADHQ16836 314 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 CCDC144BQ3MJ40 725 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 CCT6BQ92526 530 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 ARHGEF18Q6ZSZ5 1173 aa20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 MAGOHBQ96A72 148 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-204ENST00000463837 EIF3CLB5ME19 914 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 ANKRD35Q8N283 1001 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 TRIM11Q96F44 468 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 EIF3CQ99613 913 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 LRRC63Q05C16 580 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 MIER3Q7Z3K6 550 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 C1orf112Q9NSG2 853 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 KIF11P52732 1056 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 AP1ARQ63HQ0 302 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 TOGARAM2Q6ZUX3 1019 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CTAGE3PQ8IX95 158 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 PCDHB6Q9Y5E3 794 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CFBP00751 764 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 E2F4Q16254 413 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 PRR16Q569H4 304 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CAPN12Q6ZSI9 719 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 SLC17A8Q8NDX2 589 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CCHCR1Q8TD31 782 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 TUBB6Q9BUF5 446 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 GOLPH3LQ9H4A5 285 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 GREM2Q9H772 168 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CTNND1O60716 968 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 NR5A1Q13285 461 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 LRCH2Q5VUJ6 765 aa20.71■□□□□ 0.91
CCDC88B-204ENST00000463837 CHRNDQ07001 517 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 CCDC188H7C350 402 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 NR2F2P24468 414 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 BPIFB4P59827 614 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 PPP2R5DQ14738 602 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 DLGAP5Q15398 846 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 CHURC1Q8WUH1 139 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 SPATS2LQ9NUQ6 558 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 CFAP65Q6ZU64 1925 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 NCAPD2Q15021 1401 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 ARHGAP42A6NI28 874 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 RCAN1P53805 252 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 DHX9Q08211 1270 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 ASPRV1Q53RT3 343 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 PPP1R2P3Q6NXS1 205 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 CASC4Q6P4E1 433 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 DHX40Q8IX18 779 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 TXLNGQ9NUQ3 528 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 CXCR5P32302 372 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 GYG1P46976 350 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 TSGA10IPQ3SY00 556 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 TCP11Q8WWU5 503 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 BEGAINQ9BUH8 593 aa20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 PUS7LQ9H0K6 701 aaKnown RBP20.7■□□□□ 0.9
CCDC88B-204ENST00000463837 NOP56O00567 594 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 CRCPO75575 148 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 BAG2O95816 211 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 TNNI1P19237 187 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 MYL7Q01449 175 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 SEMA3FQ13275 785 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 ZNF408Q9H9D4 720 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 DIS3Q9Y2L1 958 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 PSMC2P35998 433 aaKnown RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms