RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	CA3	P07451	260 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	MYL3	P08590	195 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	IQCF3	P0C7M6	154 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	IGFBP4	P22692	258 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	MRPS5	P82675	430 aa	Known RBP	13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	PPP2R5B	Q15173	497 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	ANKRD45	Q5TZF3	282 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	SCFD2	Q8WU76	684 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	COL20A1	Q9P218	1284 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	MTCH2	Q9Y6C9	303 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	TET1	Q8NFU7	2136 aa		13.13	□□□□□ -0.31
PTPN7-204	ENST00000462815	TCF20	Q9UGU0	1960 aa	Known RBP	13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	RFXAP	O00287	272 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	PC	P11498	1178 aa	Known RBP	13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	BMP1	P13497	986 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	COL9A1	P20849	921 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	RFC2	P35250	354 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	PTPN11	Q06124	597 aa	Predicted RBP	13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	SPRED2	Q7Z698	418 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	DEFB128	Q7Z7B8	93 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	SESTD1	Q86VW0	696 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	TBC1D5	Q92609	795 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	DHX38	Q92620	1227 aa	Known RBP	13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	KAT2B	Q92831	832 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	CRBN	Q96SW2	442 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	PNMA2	Q9UL42	364 aa		13.12	□□□□□ -0.31
PTPN7-204	ENST00000462815	ZBBX	A8MT70	800 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	GOLGA8H	P0CJ92	632 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	TXN	P10599	105 aa	Known RBP	13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	TFF2	Q03403	129 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	TAP1	Q03518	808 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	ARHGAP1	Q07960	439 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	PDE4D	Q08499	809 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	RBL2	Q08999	1139 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	TCTN1	Q2MV58	587 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	PHOSPHO2	Q8TCD6	241 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	ANKS1A	Q92625	1134 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	SLC9A7	Q96T83	725 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	UHRF1	Q96T88	793 aa	Predicted RBP	13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	MAF1	Q9H063	256 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	TOMM22	Q9NS69	142 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	RAPGEFL1	Q9UHV5	662 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	KIAA1217	Q5T5P2	1943 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	NCOR1	O75376	2440 aa		13.11	□□□□□ -0.31
PTPN7-204	ENST00000462815	OPLAH	O14841	1288 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	KPNA6	O60684	536 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	LPXN	O60711	386 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	MMP3	P08254	477 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	CDC37	Q16543	378 aa	Predicted RBP	13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	USH1G	Q495M9	461 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	TMEM67	Q5HYA8	995 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	GPATCH4	Q5T3I0	446 aa	Known RBP	13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	KRT40	Q6A162	431 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	GDF6	Q6KF10	455 aa	Predicted RBP	13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	TRAF7	Q6Q0C0	670 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	MFSD6	Q6ZSS7	791 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	DGKH	Q86XP1	1220 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	HERC6	Q8IVU3	1022 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	NECAB3	Q96P71	396 aa	Predicted RBP	13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	TAAR1	Q96RJ0	339 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	ZKSCAN3	Q9BRR0	538 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	UBA5	Q9GZZ9	404 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	RAD50	Q92878	1312 aa		13.1	□□□□□ -0.31
PTPN7-204	ENST00000462815	SDS	P20132	328 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	KCNQ1	P51787	676 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	GHRHR	Q02643	423 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	LY6K	Q17RY6	165 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	FAM47C	Q5HY64	1035 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	SMC5	Q8IY18	1101 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	AFG1L	Q8WV93	481 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	GPHN	Q9NQX3	736 aa	Predicted RBP	13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	ABCB11	O95342	1321 aa		13.09	□□□□□ -0.31
PTPN7-204	ENST00000462815	LCHN	A4D1U4	455 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	BAIAP3	O94812	1187 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	CXCL10	P02778	98 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	HOXD8	P13378	290 aa	Predicted RBP	13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	MKRN4P	Q13434	485 aa	Predicted RBP	13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	TRIM71	Q2Q1W2	868 aa	Known RBP	13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	ADGRF4	Q8IZF3	695 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	ENAH	Q8N8S7	591 aa	Predicted RBP	13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	PNMA1	Q8ND90	353 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	ESR2	Q92731	530 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	WNT8B	Q93098	351 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	EMID1	Q96A84	441 aa	Predicted RBP	13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	LNPK	Q9C0E8	428 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	IL25	Q9H293	177 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	OSBPL3	Q9H4L5	887 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	CERS4	Q9HA82	394 aa		13.08	□□□□□ -0.32
PTPN7-204	ENST00000462815	HAS3	O00219	553 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	PPP1R11	O60927	126 aa	Predicted RBP	13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	NBN	O60934	754 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	KDM4A	O75164	1064 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	RGS20	O76081	388 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	F2	P00734	622 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	ACTN1	P12814	892 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	NT5C2	P49902	561 aa		13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	WDR5	P61964	334 aa	Known RBP	13.07	□□□□□ -0.32
PTPN7-204	ENST00000462815	BFSP2	Q13515	415 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 34 ms