RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 KCNV1Q6PIU1 500 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 POTEEQ6S8J3 1075 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 MAMDC4Q6UXC1 1216 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 HEATR3Q7Z4Q2 680 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 USP6NLQ92738 828 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 TINF2Q9BSI4 451 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 SLC26A6Q9BXS9 759 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 ABHD16BQ9H3Z7 469 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 TMEM63CQ9P1W3 806 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 GABRQQ9UN88 632 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.89□□□□□ -0.99
USP4-207ENST00000462673 PTCH2Q9Y6C5 1203 aa8.89□□□□□ -0.99
USP4-207ENST00000462673 NID2Q14112 1375 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 SYNGAP1Q96PV0 1343 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 DNAJC25-GNG10A0A024R161 153 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 SMCO2A6NFE2 343 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 PIK3CDO00329 1044 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 PRPF40AO75400 957 aaKnown RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 STAM2O75886 525 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 PLEKHA8P1O95397 391 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 PDIA4P13667 645 aaKnown RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 CTGFP29279 349 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 CDC27P30260 824 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 NAPAP54920 295 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 RPS6P62753 249 aaKnown RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 STXBP2Q15833 593 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 ZNF792Q3KQV3 632 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 COL13A1Q5TAT6 717 aaPredicted RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 ARHGEF16Q5VV41 709 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 XRRA1Q6P2D8 792 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 CMTR1Q8N1G2 835 aaKnown RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 PIBF1Q8WXW3 757 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 ARMC5Q96C12 935 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 MAML3Q96JK9 1138 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 CPVLQ9H3G5 476 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 SPC25Q9HBM1 224 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 BRMS1Q9HCU9 246 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 A1CFQ9NQ94 594 aaKnown RBP8.88□□□□□ -0.99
USP4-207ENST00000462673 BARHL2Q9NY43 387 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 PRDM4Q9UKN5 801 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 TPCN1Q9ULQ1 816 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 HPS5Q9UPZ3 1129 aa8.88□□□□□ -0.99
USP4-207ENST00000462673 CASP8AP2Q9UKL3 1982 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 MAFGO15525 162 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 PEX10O60683 326 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 COBLO75128 1261 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 BRD1O95696 1058 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 PGK2P07205 417 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 CNGA1P29973 690 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 GTF2F1P35269 517 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-207ENST00000462673 HSD17B4P51659 736 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 ADCY7P51828 1080 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 NLRP5P59047 1200 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 DMTNQ08495 405 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 PDE4DQ08499 809 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 SCRN1Q12765 414 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 SAFBQ15424 915 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-207ENST00000462673 ME3Q16798 604 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 MUM1L1Q5H9M0 696 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 RASGRP2Q7LDG7 609 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 RAB11FIP4Q86YS3 637 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 FAM133AQ8N9E0 248 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 CLEC4DQ8WXI8 215 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 GTF3C6Q969F1 213 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 INTS4Q96HW7 963 aaKnown RBP8.87□□□□□ -0.99
USP4-207ENST00000462673 RMDN3Q96TC7 470 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 RNF208Q9H0X6 261 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 FAM217BQ9NTX9 383 aaPredicted RBP8.87□□□□□ -0.99
USP4-207ENST00000462673 FAM184BQ9ULE4 1060 aa8.87□□□□□ -0.99
USP4-207ENST00000462673 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-207ENST00000462673 STK36Q9NRP7 1315 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 ESYT2A0FGR8 921 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 NFIBO00712 420 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 EIF3JO75822 258 aaKnown RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 LETM1O95202 739 aaPredicted RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 INHAP05111 366 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 TPM3P06753 285 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 GHRHRQ02643 423 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 AP3B2Q13367 1082 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 CUL4AQ13619 759 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 PKP1Q13835 747 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 NTRK3Q16288 839 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 GNPTABQ3T906 1256 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 BRDTQ58F21 947 aaPredicted RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 DNTTIP2Q5QJE6 756 aaKnown RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 CCDC183Q5T5S1 534 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 IQSEC1Q6DN90 963 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 NOL8Q76FK4 1167 aaKnown RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 TMEM87AQ8NBN3 555 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 ARRDC4Q8NCT1 418 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 NPLOC4Q8TAT6 608 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 PHKBQ93100 1093 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 CDHR1Q96JP9 859 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 LARP6Q9BRS8 491 aaKnown RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 ZMYND12Q9H0C1 365 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 NCOA5Q9HCD5 579 aaKnown RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 VTA1Q9NP79 307 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 RIC8AQ9NPQ8 531 aa8.86□□□□□ -0.99
USP4-207ENST00000462673 ORC3Q9UBD5 711 aaPredicted RBP8.86□□□□□ -0.99
USP4-207ENST00000462673 CNTNAP5Q8WYK1 1306 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms