RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 LOC102724428A0A0B4J2F2 783 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 CCDC69A6NI79 296 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 GOLGA8KD6RF30 607 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 LINC01387J3KSC0 135 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 STXBP3O00186 592 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 SMIM24O75264 130 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 BCAR3O75815 825 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 SMNDC1O75940 238 aaKnown RBP eCLIP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 URI1O94763 535 aaPredicted RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 GHRHP01286 108 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 ZNF865P0CJ78 1059 aaPredicted RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 BMP3P12645 472 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 RPL13P26373 211 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 CD68P34810 354 aaPredicted RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 SIK1P57059 783 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PIP4K2BP78356 416 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 MRPS35P82673 323 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 RIPK1Q13546 671 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 COL19A1Q14993 1142 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 SEPT2Q15019 361 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 INAQ16352 499 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 CLPPQ16740 277 aaPredicted RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 CCDC102BQ68D86 513 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 DZIP1Q86YF9 867 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PEX5LQ8IYB4 626 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 LRRC43Q8N309 656 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 MSANTD4Q8NCY6 345 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 SMARCC2Q8TAQ2 1214 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 USP33Q8TEY7 942 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 GFM2Q969S9 779 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 MAML3Q96JK9 1138 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 FBXL18Q96ME1 805 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PARD6BQ9BYG5 372 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 LRRCC1Q9C099 1032 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 VCXQ9H320 206 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 FAM204AQ9H8W3 233 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 ZWILCHQ9H900 591 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PCDH18Q9HCL0 1135 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PDE11AQ9HCR9 933 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 KCNK4Q9NYG8 393 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 ATXN10Q9UBB4 475 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 DKK3Q9UBP4 350 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 L1RE1Q9UN81 338 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 TRIM33Q9UPN9 1127 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 ATP6V0A2Q9Y487 856 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PPME1Q9Y570 386 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 PPRC1Q5VV67 1664 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 BCORL1Q5H9F3 1711 aa6.25□□□□□ -1.41
HMGB4-202ENST00000458277 GPATCH8Q9UKJ3 1502 aaKnown RBP6.25□□□□□ -1.41
HMGB4-202ENST00000458277 BECN2A8MW95 431 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 EIF3HO15372 352 aaKnown RBP eCLIP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 BIRC5O15392 142 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 SART1O43290 800 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 TIMM44O43615 452 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 MGRN1O60291 552 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 LZTS3O60299 673 aaPredicted RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 RNF8O76064 485 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 NPTXRO95502 500 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 PYGLP06737 847 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 GSTA2P09210 222 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 KCNA2P16389 499 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 XBP1P17861 261 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 SFPQP23246 707 aaKnown RBP eCLIP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 PSMC4P43686 418 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CCT5P48643 541 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 IDH3AP50213 366 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 RARSP54136 660 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 APBA1Q02410 837 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 PPP2R3AQ06190 1150 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 MPP3Q13368 585 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 MAP7Q14244 749 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 INF2Q27J81 1249 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 BEND6Q5SZJ8 279 aaPredicted RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 NAA16Q6N069 864 aaPredicted RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 TXNDC11Q6PKC3 985 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 LMNTD2Q8IXW0 634 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 STAG2Q8N3U4 1231 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 TSEN2Q8NCE0 465 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CFAP61Q8NHU2 1237 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 BCAS4Q8TDM0 211 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 PANK1Q8TE04 598 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CDK5RAP3Q96JB5 506 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 RPGRIP1Q96KN7 1286 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 PPP1R13BQ96KQ4 1090 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 TTC14Q96N46 770 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 NSUN5Q96P11 429 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 TRAPPC9Q96Q05 1148 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 SMC6Q96SB8 1091 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 SH3GL1Q99961 368 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CARD11Q9BXL7 1154 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CAPS2Q9BXY5 557 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 BICC1Q9H694 974 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 RETREG1Q9H6L5 497 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 EBF2Q9HAK2 575 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 CTNNAL1Q9UBT7 734 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 DDX20Q9UHI6 824 aaKnown RBP6.24□□□□□ -1.41
HMGB4-202ENST00000458277 LEMD3Q9Y2U8 911 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 MRFAP1Q9Y605 127 aa6.24□□□□□ -1.41
HMGB4-202ENST00000458277 SUPT6HQ7KZ85 1726 aaKnown RBP6.23□□□□□ -1.41
HMGB4-202ENST00000458277 BICDL2A1A5D9 508 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms