RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 USP17L12C9JPN9 530 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 USP17L21D6R901 530 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 PLSCR1O15162 318 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 PRPF3O43395 683 aaKnown RBP13.18□□□□□ -0.3
SYNE2-207ENST00000458046 ITPK1Q13572 414 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 BRD3Q15059 726 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 PARP10Q53GL7 1025 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 TEX35Q5T0J7 233 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 APTXQ7Z2E3 356 aaKnown RBP13.18□□□□□ -0.3
SYNE2-207ENST00000458046 IGSF22Q8N9C0 903 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 KMT5AQ9NQR1 393 aa13.18□□□□□ -0.3
SYNE2-207ENST00000458046 ARGLU1Q9NWB6 273 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-207ENST00000458046 TRIM64CA6NLI5 447 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PYGBP11216 843 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 VEGFAP15692 232 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PLA2G4AP47712 749 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 CLK2P49760 499 aaKnown RBP13.17□□□□□ -0.3
SYNE2-207ENST00000458046 RCAN1P53805 252 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PPP2R3AQ06190 1150 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 TROAPQ12815 778 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PTGDRQ13258 359 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 SLC4A8Q2Y0W8 1093 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 FAM47AQ5JRC9 791 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PPFIBP1Q86W92 1011 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 IQCA1Q86XH1 822 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 MCF2L2Q86YR7 1114 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 CCDC12Q8WUD4 166 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-207ENST00000458046 PHOX2BQ99453 314 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 LOC102724428A0A0B4J2F2 783 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 GOLGA6L9A6NEM1 432 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 ADAMTS3O15072 1205 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 SIK1P57059 783 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 CUL4BQ13620 913 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 RAD9BQ6WBX8 426 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 SH3RF1Q7Z6J0 888 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 SLF2Q8IX21 1173 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 ZNF384Q8TF68 577 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 CCDC34Q96HJ3 373 aa13.17□□□□□ -0.3
SYNE2-207ENST00000458046 DPYSL4O14531 572 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 KCNA2P16389 499 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 DPYDQ12882 1025 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 DNAJC21Q5F1R6 531 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 TTC38Q5R3I4 469 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 PPP4R4Q6NUP7 873 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ZCCHC8Q6NZY4 707 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CTR9Q6PD62 1173 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 KIFC2Q96AC6 838 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ABHD8Q96I13 439 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 MRFAP1Q9Y605 127 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CCT6AP40227 531 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CDKN1CP49918 316 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 PPP2R5BQ15173 497 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ERFEQ4G0M1 354 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 BICDL1Q6ZP65 573 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 PIK3AP1Q6ZUJ8 805 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ANKRD18AQ8IVF6 992 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 SRBD1Q8N5C6 995 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 HELQQ8TDG4 1101 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 NOL10Q9BSC4 688 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ALG2Q9H553 416 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 BRMS1Q9HCU9 246 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ADD3Q9UEY8 706 aaKnown RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CTNND2Q9UQB3 1225 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 ANKRD36CQ5JPF3 1778 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CCDC175P0C221 793 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CDC25AP30304 524 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CASP14P31944 242 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 MCM7P33993 719 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 NPY5RQ15761 445 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 CAVIN4Q5BKX8 364 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 SMIM5Q71RC9 77 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 FERMT2Q96AC1 680 aa13.16□□□□□ -0.3
SYNE2-207ENST00000458046 EVLQ9UI08 416 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-207ENST00000458046 TIAM2Q8IVF5 1701 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 hCG_1984214I3L0E3 225 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 POLR3GO15318 223 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-207ENST00000458046 LILRB3O75022 631 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 NLRP5P59047 1200 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 SATB1Q01826 763 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 IFT88Q13099 833 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 FAM84BQ96KN1 310 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-207ENST00000458046 GSDMAQ96QA5 445 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 PANX2Q96RD6 677 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 MAPK8IP1Q9UQF2 711 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 JAG2Q9Y219 1238 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 SSUH2Q9Y2M2 353 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 ADGRG1Q9Y653 693 aa13.15□□□□□ -0.3
SYNE2-207ENST00000458046 KLRK1P26718 216 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 SEPT2Q15019 361 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 CDKAL1Q5VV42 579 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 RRAGBQ5VZM2 374 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 ERAP2Q6P179 960 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 EP400NLQ6ZTU2 488 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 TMTC3Q6ZXV5 915 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 TNFRSF25Q93038 417 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 VPS16Q9H269 839 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 RBM28Q9NW13 759 aaKnown RBP13.15□□□□□ -0.31
SYNE2-207ENST00000458046 LIMD1Q9UGP4 676 aa13.15□□□□□ -0.31
SYNE2-207ENST00000458046 ZNF804BA4D1E1 1349 aa13.14□□□□□ -0.31
SYNE2-207ENST00000458046 COL4A1P02462 1669 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms