RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SP8Q8IXZ3 490 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 MARCH10Q8NA82 808 aaPredicted RBP6.08□□□□□ -1.44
USP40-209ENST00000452724 NLGN2Q8NFZ4 835 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 ZNF669Q96BR6 464 aaPredicted RBP6.08□□□□□ -1.44
USP40-209ENST00000452724 KCNC2Q96PR1 638 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 LGR4Q9BXB1 951 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 PCDHA5Q9Y5H7 936 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 BACE2Q9Y5Z0 518 aa6.08□□□□□ -1.44
USP40-209ENST00000452724 IQCA1LA6NCM1 817 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 B8ZZF3 427 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 STXBP3O00186 592 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 KCNH1O95259 989 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 MSL3P1P0C860 447 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 ZNF200P98182 395 aaPredicted RBP6.07□□□□□ -1.44
USP40-209ENST00000452724 IFRD2Q12894 506 aaPredicted RBP6.07□□□□□ -1.44
USP40-209ENST00000452724 TRIM59Q8IWR1 403 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 TMEFF1Q8IYR6 380 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 MRGPRX3Q96LB0 322 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 PWWP2AQ96N64 755 aa6.07□□□□□ -1.44
USP40-209ENST00000452724 CDK11AQ9UQ88 783 aaPredicted RBP6.07□□□□□ -1.44
USP40-209ENST00000452724 F8W031 263 aaPredicted RBP6.06□□□□□ -1.44
USP40-209ENST00000452724 PRRG2O14669 202 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 TRIM13O60858 407 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 VAMP4O75379 141 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 NCKAP1LP55160 1127 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 DPY19L1Q2PZI1 675 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 ERICH6BQ5W0A0 696 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 SPATC1Q76KD6 591 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 RELTQ969Z4 430 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 SGSM3Q96HU1 749 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 RNF38Q9H0F5 515 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 EPB41L4AQ9HCS5 686 aaPredicted RBP6.06□□□□□ -1.44
USP40-209ENST00000452724 PFDN2Q9UHV9 154 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 NUDT5Q9UKK9 219 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 FAN1Q9Y2M0 1017 aa6.06□□□□□ -1.44
USP40-209ENST00000452724 NCANO14594 1321 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 IRS2Q9Y4H2 1338 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 A0A1W2PQU0 124 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 C2orf71A6NGG8 1288 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 TBX1O43435 398 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 PAMP19021 973 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 TACR1P25103 407 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 GTF2IRD2BQ6EKJ0 949 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 GTF2IRD2Q86UP8 949 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 LRRC47Q8N1G4 583 aaKnown RBP6.05□□□□□ -1.44
USP40-209ENST00000452724 LZTR1Q8N653 840 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 MRFAP1L1Q96HT8 127 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 MCMBPQ9BTE3 642 aa6.05□□□□□ -1.44
USP40-209ENST00000452724 NPHP3-ACAD11A0A0J9YXS1 232 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 PPP2R2AP63151 447 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 PRR5P85299 388 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 CAP1Q01518 475 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 SSRP1Q08945 709 aaKnown RBP6.04□□□□□ -1.44
USP40-209ENST00000452724 NFIXQ14938 502 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 LINC01356Q8N9X3 169 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 USP33Q8TEY7 942 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 BTN2A2Q8WVV5 523 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 PEX11GQ96HA9 241 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 DNAJC7Q99615 494 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 SPATA9Q9BWV2 254 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 PIF1Q9H611 641 aa6.04□□□□□ -1.44
USP40-209ENST00000452724 ZC3H12DA2A288 527 aaKnown RBP6.03□□□□□ -1.44
USP40-209ENST00000452724 NPHS1O60500 1241 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 DIAPH1O60610 1272 aaKnown RBP6.03□□□□□ -1.44
USP40-209ENST00000452724 NCAM1P13591 858 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 IGFBP6P24592 240 aaPredicted RBP6.03□□□□□ -1.44
USP40-209ENST00000452724 HSP90AA2PQ14568 343 aaPredicted RBP6.03□□□□□ -1.44
USP40-209ENST00000452724 SLC9A5Q14940 896 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 NETO2Q8NC67 525 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 ALG3Q92685 438 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 KRTAP4-9Q9BYQ8 210 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 NKX2-4Q9H2Z4 354 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 LUC7LQ9NQ29 371 aaKnown RBP6.03□□□□□ -1.44
USP40-209ENST00000452724 RTEL1Q9NZ71 1219 aa6.03□□□□□ -1.44
USP40-209ENST00000452724 KRTAP9-7A8MTY7 169 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 CAPNS1P04632 268 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 GLI4P10075 376 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 SYN1P17600 705 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 LIMS1P48059 325 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 SCRN1Q12765 414 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 VMACQ2NL98 169 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 C20orf173Q96LM9 149 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 AARSD1Q9BTE6 412 aaKnown RBP6.02□□□□□ -1.45
USP40-209ENST00000452724 CYP26B1Q9NR63 512 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 ARHGEF4Q9NR80 690 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 RWDD3Q9Y3V2 267 aa6.02□□□□□ -1.45
USP40-209ENST00000452724 KDM2BQ8NHM5 1336 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 A0A0G2JLL6 359 aaPredicted RBP6.01□□□□□ -1.45
USP40-209ENST00000452724 ADCY3O60266 1144 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 ZBTB7AO95365 584 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 SNRPB2P08579 225 aaKnown RBP6.01□□□□□ -1.45
USP40-209ENST00000452724 HOXC12P31275 282 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 GRIA2P42262 883 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 FOXO4P98177 505 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 CPNE8Q86YQ8 564 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 TSPAN17Q96FV3 270 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 CCDC140Q96MF4 163 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.01□□□□□ -1.45
USP40-209ENST00000452724 PMF1-BGLAPU3KQ54 211 aa6.01□□□□□ -1.45
USP40-209ENST00000452724 TRAV20A0A0B4J274 112 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms