RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 MYL3P08590 195 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 MCM5P33992 734 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 TROAPQ12815 778 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 STXBP2Q15833 593 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 C9orf50Q5SZB4 431 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 NFXL1Q6ZNB6 911 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 SKAP1Q86WV1 359 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 CTCFLQ8NI51 663 aaPredicted RBP17.73■□□□□ 0.43
CHD3-205ENST00000449744 PIGSQ96S52 555 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 IWS1Q96ST2 819 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 MTA3Q9BTC8 594 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 RIOX1Q9H6W3 641 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 COL20A1Q9P218 1284 aa17.73■□□□□ 0.43
CHD3-205ENST00000449744 PPP1R11O60927 126 aaPredicted RBP17.72■□□□□ 0.43
CHD3-205ENST00000449744 EIF2AK2P19525 551 aaKnown RBP17.72■□□□□ 0.43
CHD3-205ENST00000449744 PSMC6P62333 389 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 CREB3L3Q68CJ9 461 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 SEPT14Q6ZU15 432 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 TMTC2Q8N394 836 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 SAMD3Q8N6K7 520 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 SLC43A3Q8NBI5 491 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 TMEM87BQ96K49 555 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 PPP1R12CQ9BZL4 782 aa17.72■□□□□ 0.43
CHD3-205ENST00000449744 MAP3K20Q9NYL2 800 aaKnown RBP17.72■□□□□ 0.43
CHD3-205ENST00000449744 PNMA6FA0A0J9YX94 578 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 CCDC69A6NI79 296 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 DDAH1O94760 285 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 KIF5BP33176 963 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 HSD17B4P51659 736 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 RNF20Q5VTR2 975 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 MFSD5Q6N075 450 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 Q7L0L9 218 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 ZNF654Q8IZM8 581 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 TMEM199Q8N511 208 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 COPS5Q92905 334 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 CCDC136Q96JN2 1154 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 RNPC3Q96LT9 517 aaKnown RBP17.71■□□□□ 0.43
CHD3-205ENST00000449744 MTG1Q9BT17 334 aaPredicted RBP17.71■□□□□ 0.43
CHD3-205ENST00000449744 LY9Q9HBG7 655 aa17.71■□□□□ 0.43
CHD3-205ENST00000449744 DLL1O00548 723 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 CYTH3O43739 400 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 KPNA6O60684 536 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 CD4P01730 458 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 NR3C2P08235 984 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 EPHB4P54760 987 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 PURAQ00577 322 aaKnown RBP17.7■□□□□ 0.42
CHD3-205ENST00000449744 PPIGQ13427 754 aaKnown RBP eCLIP17.7■□□□□ 0.42
CHD3-205ENST00000449744 NECTIN1Q15223 517 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 MAP3K14Q99558 947 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 PXMP2Q9NR77 195 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 GRIN2DO15399 1336 aa17.7■□□□□ 0.42
CHD3-205ENST00000449744 GCOM1H8Y6P7 765 aaPredicted RBP17.69■□□□□ 0.42
CHD3-205ENST00000449744 SH2B2O14492 632 aaPredicted RBP17.69■□□□□ 0.42
CHD3-205ENST00000449744 OPLAHO14841 1288 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 CDC45O75419 566 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 EIF3JO75822 258 aaKnown RBP17.69■□□□□ 0.42
CHD3-205ENST00000449744 ARIH2O95376 493 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 GH1P01241 217 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 POLR2MP0CAP2 368 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 HOXA13P31271 388 aaPredicted RBP17.69■□□□□ 0.42
CHD3-205ENST00000449744 GNAQP50148 359 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 GHRHRQ02643 423 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 SLC35G1Q2M3R5 365 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 PIBF1Q8WXW3 757 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 MYL10Q9BUA6 226 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 HIPK3Q9H422 1215 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 LAMA3Q16787 3333 aa17.69■□□□□ 0.42
CHD3-205ENST00000449744 A6NJR5 290 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 B4GALT4O60513 344 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 CALM1P0DP23 149 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 CALM2P0DP24 149 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 CALM3P0DP25 149 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 MYCLP12524 364 aaPredicted RBP17.68■□□□□ 0.42
CHD3-205ENST00000449744 LY6KQ17RY6 165 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 FAM47CQ5HY64 1035 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 CCDC62Q6P9F0 684 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 RRP36Q96EU6 259 aaKnown RBP17.68■□□□□ 0.42
CHD3-205ENST00000449744 LZTS2Q9BRK4 669 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 TRPV6Q9H1D0 765 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 SEC63Q9UGP8 760 aaKnown RBP17.68■□□□□ 0.42
CHD3-205ENST00000449744 MRVI1Q9Y6F6 885 aa17.68■□□□□ 0.42
CHD3-205ENST00000449744 SUPT20HL2P0C7V6 817 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 CSF2RAP15509 400 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 CYP2C18P33260 490 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 LIFRP42702 1097 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 SMAD3P84022 425 aaKnown RBP17.67■□□□□ 0.42
CHD3-205ENST00000449744 ZNF697Q5TEC3 545 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 FAM109BQ6ICB4 259 aaPredicted RBP17.67■□□□□ 0.42
CHD3-205ENST00000449744 FCHSD1Q86WN1 690 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 PDCD2LQ9BRP1 358 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 SPZ1Q9BXG8 430 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 ALDH8A1Q9H2A2 487 aaPredicted RBP17.67■□□□□ 0.42
CHD3-205ENST00000449744 MTMR10Q9NXD2 777 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 SLC12A7Q9Y666 1083 aa17.67■□□□□ 0.42
CHD3-205ENST00000449744 SMARCA1P28370 1054 aa17.66■□□□□ 0.42
CHD3-205ENST00000449744 CHMP4BP1P59074 171 aa17.66■□□□□ 0.42
CHD3-205ENST00000449744 NBPF20Q3BBV1 942 aa17.66■□□□□ 0.42
CHD3-205ENST00000449744 SYNE3Q6ZMZ3 975 aa17.66■□□□□ 0.42
CHD3-205ENST00000449744 AFG1LQ8WV93 481 aa17.66■□□□□ 0.42
CHD3-205ENST00000449744 NEK1Q96PY6 1258 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms