RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 EIF3CQ99613 913 aaKnown RBP13.14□□□□□ -0.31
MSH6-204ENST00000445503 ORC4O43929 436 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 SLC16A2P36021 539 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 E2F4Q16254 413 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 VWA3BQ502W6 1294 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 IFT20Q8IY31 132 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 MYOCDQ8IZQ8 938 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 RETREG2Q8NC44 543 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 CCDC113Q9H0I3 377 aa13.14□□□□□ -0.31
MSH6-204ENST00000445503 PACSIN2Q9UNF0 486 aaPredicted RBP13.14□□□□□ -0.31
MSH6-204ENST00000445503 MAP2K7O14733 419 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 SRGNP10124 158 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 PPFIA1Q13136 1202 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 TXNRD3Q86VQ6 643 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 MS4A14Q96JA4 679 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 FAM53CQ9NYF3 392 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 RTCBQ9Y3I0 505 aaKnown RBP13.13□□□□□ -0.31
MSH6-204ENST00000445503 A0A1W2PQC6 194 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 PPP1R2P41236 205 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 APTXQ7Z2E3 356 aaKnown RBP13.13□□□□□ -0.31
MSH6-204ENST00000445503 TRAPPC11Q7Z392 1133 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 TBC1D5Q92609 795 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 LRRC27Q9C0I9 530 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 C5P01031 1676 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 SMIM23A6NLE4 172 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 MAN2A1Q16706 1144 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 TAX1BP1Q86VP1 789 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 PPM1EQ8WY54 764 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 NGLY1Q96IV0 654 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 RAB21Q9UL25 225 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 CRYBG1Q9Y4K1 1723 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 KCNK3O14649 394 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 PBX1P40424 430 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 FUT2Q10981 343 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 GIMAP8Q8ND71 665 aaPredicted RBP13.13□□□□□ -0.31
MSH6-204ENST00000445503 BARHL2Q9NY43 387 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 ZNF219Q9P2Y4 722 aaPredicted RBP13.13□□□□□ -0.31
MSH6-204ENST00000445503 HPCAL4Q9UM19 191 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 NFU1Q9UMS0 254 aa13.13□□□□□ -0.31
MSH6-204ENST00000445503 PSMD14O00487 310 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 HEXIM1O94992 359 aaKnown RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 TDP2O95551 362 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 PDCLQ13371 301 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 ASIC2Q16515 512 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 VPS36Q86VN1 386 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 CCDC65Q8IXS2 484 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 PANK4Q9NVE7 773 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 ADAMTS1Q9UHI8 967 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 FAM184BQ9ULE4 1060 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 REXO2Q9Y3B8 237 aaKnown RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 RGPD5Q99666 1765 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 CAMTA1Q9Y6Y1 1673 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 USP17L5A8MUK1 530 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 RHOBTB3O94955 611 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 USP8P40818 1118 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 MFSD14BQ5SR56 506 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 CLEC10AQ8IUN9 316 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 UBLCP1Q8WVY7 318 aaPredicted RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 RCCD1A6NED2 376 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 INPP5BP32019 993 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 RDXP35241 583 aaKnown RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 CDR1P51861 262 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 FAM26FQ5R3K3 315 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 CCNI2Q6ZMN8 369 aaPredicted RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 PROCA1Q8NCQ7 364 aaPredicted RBP13.12□□□□□ -0.31
MSH6-204ENST00000445503 SPATA4Q8NEY3 305 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 OSBPL9Q96SU4 736 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 LZTS2Q9BRK4 669 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 PCDHA12Q9UN75 941 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 KIAA1024Q9UPX6 916 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 CAPN6Q9Y6Q1 641 aa13.12□□□□□ -0.31
MSH6-204ENST00000445503 PPFIA4O75335 1185 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 CDK8P49336 464 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 KCNB1Q14721 858 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 GRM4Q14833 912 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 MUM1L1Q5H9M0 696 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 C12orf60Q5U649 245 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 GALNT17Q6IS24 598 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 TTI2Q6NXR4 508 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 DPP8Q6V1X1 898 aaPredicted RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 ADAT2Q7Z6V5 191 aaKnown RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 FAM133AQ8N9E0 248 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 HDAC7Q8WUI4 952 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 DDX12PQ92771 950 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 AK8Q96MA6 479 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 DMGDHQ9UI17 866 aaKnown RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 TLDC2A0PJX2 215 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 PLS1Q14651 629 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 CEP85LQ5SZL2 805 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 GPBP1Q86WP2 473 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 SH2D3CQ8N5H7 860 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 IPO4Q8TEX9 1081 aaKnown RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 PPANQ9NQ55 473 aaKnown RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 PDS5AQ29RF7 1337 aaKnown RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 COL5A2P05997 1499 aaPredicted RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 LAD1O00515 517 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 CETN3O15182 167 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 ERLIN2O94905 339 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 SLC1A4P43007 532 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 TNNC1P63316 161 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms