RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 PXMP2Q9NR77 195 aa21.51■■□□□ 1.03
SHH-204ENST00000441114 MAP3K20Q9NYL2 800 aaKnown RBP21.51■■□□□ 1.03
SHH-204ENST00000441114 BRCA2P51587 3418 aa21.51■■□□□ 1.03
SHH-204ENST00000441114 NID2Q14112 1375 aa21.5■■□□□ 1.03
SHH-204ENST00000441114 MYCLP12524 364 aaPredicted RBP21.5■■□□□ 1.03
SHH-204ENST00000441114 GHRHRQ02643 423 aa21.5■■□□□ 1.03
SHH-204ENST00000441114 USP17L6PQ6QN14 398 aa21.5■■□□□ 1.03
SHH-204ENST00000441114 C22orf23Q9BZE7 217 aa21.5■■□□□ 1.03
SHH-204ENST00000441114 KBTBD13C9JR72 458 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 DUSP11O75319 330 aaKnown RBP21.49■■□□□ 1.03
SHH-204ENST00000441114 PTGS1P23219 599 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 EDNRBP24530 442 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 NAPAP54920 295 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 AKAP17AQ02040 695 aaKnown RBP21.49■■□□□ 1.03
SHH-204ENST00000441114 LRRC41Q15345 812 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 TMEM63BQ5T3F8 832 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 DPF3Q92784 378 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 IL17RAQ96F46 866 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 SLC26A6Q9BXS9 759 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 PSTPIP2Q9H939 334 aa21.49■■□□□ 1.03
SHH-204ENST00000441114 DNM1LO00429 736 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 NR3C2P08235 984 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 SMPD1P17405 629 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 IRX5P78411 483 aaPredicted RBP21.48■■□□□ 1.03
SHH-204ENST00000441114 STXBP2Q15833 593 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 IQSEC1Q6DN90 963 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 SEPT14Q6ZU15 432 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 RNF180Q86T96 592 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 ZFP91Q96JP5 570 aaPredicted RBP21.48■■□□□ 1.03
SHH-204ENST00000441114 IWS1Q96ST2 819 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 HTATIP2Q9BUP3 242 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 SENP6Q9GZR1 1112 aaPredicted RBP21.48■■□□□ 1.03
SHH-204ENST00000441114 ALDH8A1Q9H2A2 487 aaPredicted RBP21.48■■□□□ 1.03
SHH-204ENST00000441114 TPCN1Q9ULQ1 816 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 KIAA1217Q5T5P2 1943 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 SYNRGQ9UMZ2 1314 aa21.48■■□□□ 1.03
SHH-204ENST00000441114 STXBP3O00186 592 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 MEIS2O14770 477 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 CPLX1O14810 134 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 PRPF3O43395 683 aaKnown RBP21.47■■□□□ 1.03
SHH-204ENST00000441114 ANKRD1Q15327 319 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 NTRK3Q16288 839 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 UBE2SQ16763 222 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 PDCD2LQ9BRP1 358 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 WDR11Q9BZH6 1224 aa21.47■■□□□ 1.03
SHH-204ENST00000441114 SLKQ9H2G2 1235 aaPredicted RBP21.47■■□□□ 1.03
SHH-204ENST00000441114 MYADML2A6NDP7 307 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 DYNC1LI2O43237 492 aaPredicted RBP21.46■■□□□ 1.03
SHH-204ENST00000441114 ADAMTS4O75173 837 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 C6orf222P0C671 652 aaPredicted RBP21.46■■□□□ 1.03
SHH-204ENST00000441114 SCG2P13521 617 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 IFNAR1P17181 557 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 PGM5Q15124 567 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 PFKFB3Q16875 520 aaPredicted RBP21.46■■□□□ 1.03
SHH-204ENST00000441114 TYW1BQ6NUM6 668 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 FERMT2Q96AC1 680 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 UPF2Q9HAU5 1272 aaKnown RBP21.46■■□□□ 1.03
SHH-204ENST00000441114 SPC25Q9HBM1 224 aa21.46■■□□□ 1.03
SHH-204ENST00000441114 ALPK3Q96L96 1907 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 SMCO2A6NFE2 343 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 SSRP1Q08945 709 aaKnown RBP21.45■■□□□ 1.02
SHH-204ENST00000441114 SCRN1Q12765 414 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 TLK2Q86UE8 772 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 IL31RAQ8NI17 732 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 AP5M1Q9H0R1 490 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 BARHL2Q9NY43 387 aa21.45■■□□□ 1.02
SHH-204ENST00000441114 GNEQ9Y223 722 aaKnown RBP21.45■■□□□ 1.02
SHH-204ENST00000441114 RBM47A0AV96 593 aaKnown RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 hCG_1984214I3L0E3 225 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 PIK3CDO00329 1044 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 DTNBO60941 627 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 TXNP10599 105 aaKnown RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 COL6A1P12109 1028 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 CCND2P30279 289 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 ATN1P54259 1190 aaPredicted RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 GJA9P57773 515 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 BEX3Q00994 111 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 PKN1Q16512 942 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 CPLX2Q6PUV4 134 aaKnown RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 ZNF713Q8N859 430 aaPredicted RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 SCFD2Q8WU76 684 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 COPS5Q92905 334 aa21.44■■□□□ 1.02
SHH-204ENST00000441114 RNF26Q9BY78 433 aaPredicted RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 RBM27Q9P2N5 1060 aaKnown RBP21.44■■□□□ 1.02
SHH-204ENST00000441114 PFKFB2O60825 505 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 EIF3JO75822 258 aaKnown RBP21.43■■□□□ 1.02
SHH-204ENST00000441114 ADCY7P51828 1080 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 KCNA10Q16322 511 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 DUSP28Q4G0W2 176 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 GNASQ5JWF2 1037 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 PPP1R18Q6NYC8 613 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 TRIM22Q8IYM9 498 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 NECAB1Q8N987 351 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 KLHDC9Q8NEP7 349 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 KIF2CQ99661 725 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 UPF3AQ9H1J1 476 aaKnown RBP21.43■■□□□ 1.02
SHH-204ENST00000441114 MYH7BA7E2Y1 1941 aa21.43■■□□□ 1.02
SHH-204ENST00000441114 TNRC18O15417 2968 aaPredicted RBP21.42■■□□□ 1.02
SHH-204ENST00000441114 SPDYE3A6NKU9 549 aa21.42■■□□□ 1.02
SHH-204ENST00000441114 ARIH2O95376 493 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms