RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 POLR2MP0CAP2 368 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 PSMA5P28066 241 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 NKX3-2P78367 333 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 TRIM60Q495X7 471 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 DUSP28Q4G0W2 176 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 C1orf53Q5VUE5 145 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 CCSAPQ6IQ19 270 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-201ENST00000437679 APOA5Q6Q788 366 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 SCFD2Q8WU76 684 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 GLT1D1Q96MS3 346 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 RBM28Q9NW13 759 aaKnown RBP17.57■□□□□ 0.4
LIMS3-201ENST00000437679 PRKAG2Q9UGJ0 569 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 TRIOBPQ9H2D6 2365 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 ASGR1P07306 291 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 EIF2AK2P19525 551 aaKnown RBP17.56■□□□□ 0.4
LIMS3-201ENST00000437679 IRX5P78411 483 aaPredicted RBP17.56■□□□□ 0.4
LIMS3-201ENST00000437679 BEX3Q00994 111 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 PPP2R5BQ15173 497 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 STXBP2Q15833 593 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 FSCN1Q16658 493 aaKnown RBP17.56■□□□□ 0.4
LIMS3-201ENST00000437679 RTN1Q16799 776 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 TMTC3Q6ZXV5 915 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 CMTR1Q8N1G2 835 aaKnown RBP17.56■□□□□ 0.4
LIMS3-201ENST00000437679 VTI1AQ96AJ9 217 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 PXMP2Q9NR77 195 aa17.56■□□□□ 0.4
LIMS3-201ENST00000437679 NAP1L2Q9ULW6 460 aaPredicted RBP17.56■□□□□ 0.4
LIMS3-201ENST00000437679 ELP1O95163 1332 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 DNAH12Q6ZR08 3092 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 KLF18A0A0U1RQI7 1052 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 NKRFO15226 690 aaKnown RBP eCLIP17.55■□□□□ 0.4
LIMS3-201ENST00000437679 CTAGE5O15320 804 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 CPA1P15085 419 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 HOXA13P31271 388 aaPredicted RBP17.55■□□□□ 0.4
LIMS3-201ENST00000437679 TTLL4Q14679 1199 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 HABP4Q5JVS0 413 aaKnown RBP17.55■□□□□ 0.4
LIMS3-201ENST00000437679 Q6ZUG5 572 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 CCDC82Q8N4S0 544 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 USP26Q9BXU7 913 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 BRPF3Q9ULD4 1205 aa17.55■□□□□ 0.4
LIMS3-201ENST00000437679 GOLGA8AA7E2F4 631 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 GOLGA8BA8MQT2 603 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 NR3C2P08235 984 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 CASTP20810 708 aaKnown RBP17.54■□□□□ 0.4
LIMS3-201ENST00000437679 PTGS1P23219 599 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 RPS6KB1P23443 525 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 RCAN1P53805 252 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 TLE2Q04725 743 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 TMEM63BQ5T3F8 832 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 SEPT14Q6ZU15 432 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 FCHSD1Q86WN1 690 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 OR6J1Q8NGC5 347 aa17.54■□□□□ 0.4
LIMS3-201ENST00000437679 RBM27Q9P2N5 1060 aaKnown RBP17.54■□□□□ 0.4
LIMS3-201ENST00000437679 EIF3JO75822 258 aaKnown RBP17.53■□□□□ 0.4
LIMS3-201ENST00000437679 CABYRO75952 493 aa17.53■□□□□ 0.4
LIMS3-201ENST00000437679 TXNP10599 105 aaKnown RBP17.53■□□□□ 0.4
LIMS3-201ENST00000437679 CPT1AP50416 773 aa17.53■□□□□ 0.4
LIMS3-201ENST00000437679 BRDTQ58F21 947 aaPredicted RBP17.53■□□□□ 0.4
LIMS3-201ENST00000437679 CUL5Q93034 780 aa17.53■□□□□ 0.4
LIMS3-201ENST00000437679 LBHD1Q9BQE6 289 aaPredicted RBP17.53■□□□□ 0.4
LIMS3-201ENST00000437679 PDCD2LQ9BRP1 358 aa17.53■□□□□ 0.4
LIMS3-201ENST00000437679 PRDM5Q9NQX1 630 aaPredicted RBP17.53■□□□□ 0.4
LIMS3-201ENST00000437679 A0A0U1RQG5 324 aaPredicted RBP17.52■□□□□ 0.4
LIMS3-201ENST00000437679 PQBP1O60828 265 aaKnown RBP17.52■□□□□ 0.4
LIMS3-201ENST00000437679 MYCLP12524 364 aaPredicted RBP17.52■□□□□ 0.4
LIMS3-201ENST00000437679 MAGEA10P43363 369 aaPredicted RBP17.52■□□□□ 0.4
LIMS3-201ENST00000437679 APOBRQ0VD83 1088 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 CXCL17Q6UXB2 119 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 FBXL16Q8N461 479 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 SMARCC2Q8TAQ2 1214 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 BRF1Q92994 677 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 GDF15Q99988 308 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 PRO3102Q9H379 93 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 KIAA1217Q5T5P2 1943 aa17.52■□□□□ 0.4
LIMS3-201ENST00000437679 MROH7Q68CQ1 1323 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 CNTNAP5Q8WYK1 1306 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 CCDC196A0A1B0GTZ2 297 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 hCG_1642624A0A1W2PR95 340 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 DCDC2CA8MYV0 355 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 EIF5BO60841 1220 aaKnown RBP17.51■□□□□ 0.39
LIMS3-201ENST00000437679 CCND2P30279 289 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 BMP8BP34820 402 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 METAP2P50579 478 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIMS3-201ENST00000437679 PGM5Q15124 567 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 HEATR3Q7Z4Q2 680 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 TOX2Q96NM4 488 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 POLR3EQ9NVU0 708 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 CYP46A1Q9Y6A2 500 aa17.51■□□□□ 0.39
LIMS3-201ENST00000437679 ARVCFO00192 962 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 ARIH2O95376 493 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 CLTBP09497 229 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 MDM2Q00987 491 aaPredicted RBP17.5■□□□□ 0.39
LIMS3-201ENST00000437679 CCDC62Q6P9F0 684 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 RUFY3Q7L099 469 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 ANKRD33Q7Z3H0 272 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 VSIG10LQ86VR7 867 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 COPS5Q92905 334 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 PSTPIP2Q9H939 334 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 ZSWIM6Q9HCJ5 1215 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 PDLIM7Q9NR12 457 aa17.5■□□□□ 0.39
LIMS3-201ENST00000437679 MRVI1Q9Y6F6 885 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms