RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CRLF3Q8IUI8 442 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 ELOA2Q8IYF1 753 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 CNBD1Q8NA66 436 aa7.79□□□□□ -1.16
VPS53-204ENST00000437048 FOXP1Q9H334 677 aaPredicted RBP7.79□□□□□ -1.16
VPS53-204ENST00000437048 KRT75O95678 551 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 PARP1P09874 1014 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 TTC38Q5R3I4 469 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 DENND2AQ9ULE3 1009 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 PLEKHG1Q9ULL1 1385 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ATF7P17544 494 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 CEP85Q6P2H3 762 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 CNBD2Q96M20 576 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ESRRAP11474 423 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 GUCY1B3Q02153 619 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 MYSM1Q5VVJ2 828 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 PPP1R13BQ96KQ4 1090 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 TRAIPQ9BWF2 469 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 PRDM11Q9NQV5 511 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 SPAG6O75602 509 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 KLHL38Q2WGJ6 581 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 C2CD5Q86YS7 1000 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 MRPL50Q8N5N7 158 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 NECAB1Q8N987 351 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ADCY8P40145 1251 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS53-204ENST00000437048 CROCCP3Q8IVE0 287 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 MYOCDQ8IZQ8 938 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 OTUB1Q96FW1 271 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 OSBPL5Q9H0X9 879 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 ANKIB1Q9P2G1 1089 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 CCDC159P0C7I6 412 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 VPS39Q96JC1 886 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ECT2Q9H8V3 914 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 TRIM69Q86WT6 500 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 REXO1Q8N1G1 1221 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 SGSM3Q96HU1 749 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 RWDD2AQ9UIY3 292 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 XPO1O14980 1071 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 POLR2DO15514 142 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 TTKP33981 857 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 RAD51AP2Q09MP3 1159 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 TNIP2Q8NFZ5 429 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 KPNA7A9QM74 516 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ECEL1O95672 775 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 LAMB3Q13751 1172 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 AASDHQ4L235 1098 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 NOSTRINQ8IVI9 506 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 NELFBQ8WX92 580 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 C14orf93Q9H972 538 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 UVRAGQ9P2Y5 699 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 FOSP01100 380 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 LRIG3Q6UXM1 1119 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 TUBGCP3Q96CW5 907 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 MBIPQ9NS73 344 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 SUN2Q9UH99 717 aa7.78□□□□□ -1.16
VPS53-204ENST00000437048 ZMYND8Q9ULU4 1186 aaPredicted RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 CFAP65Q6ZU64 1925 aaKnown RBP7.78□□□□□ -1.16
VPS53-204ENST00000437048 PFKFB2O60825 505 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 RAB14P61106 215 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 SLC44A4Q53GD3 710 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 PARP10Q53GL7 1025 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 JADE1Q6IE81 842 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 PCDHB15Q9Y5E8 787 aa7.77□□□□□ -1.16
VPS53-204ENST00000437048 BYSLQ13895 437 aaKnown RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 DHX34Q14147 1143 aaKnown RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 SURF1Q15526 300 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 KBTBD3Q8NAB2 608 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 TBC1D22AQ8WUA7 517 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 SIKE1Q9BRV8 207 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 MCM9Q9NXL9 1143 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 FKBP3Q00688 224 aaKnown RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 OTUD6AQ7L8S5 288 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 RIN3Q8TB24 985 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 KANSL1LA0AUZ9 987 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 GSTA1P08263 222 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 S100A5P33763 92 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 HSP90AA4PQ58FG1 418 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 ZNF579Q8NAF0 562 aaKnown RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 PPP1R14BQ96C90 147 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 HNRNPCP07910 306 aaKnown RBP eCLIP7.77□□□□□ -1.171e-6■■□□□ 11.4
VPS53-204ENST00000437048 TOM1L2Q6ZVM7 507 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 STK38LQ9Y2H1 464 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 SCG2P13521 617 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 STX3Q13277 289 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 UBE3BQ7Z3V4 1068 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 STMN3Q9NZ72 180 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 TRMT112Q9UI30 125 aaKnown RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 ZHX2Q9Y6X8 837 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 WASLO00401 505 aaPredicted RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 MEFVO15553 781 aaPredicted RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 DIAPH2O60879 1101 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 S100BP04271 92 aaPredicted RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 PDLIM2Q96JY6 352 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 SNX25Q9H3E2 840 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 KLC4Q9NSK0 619 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 GMNCA6NCL1 334 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 HIBCHQ6NVY1 386 aaPredicted RBP7.77□□□□□ -1.17
VPS53-204ENST00000437048 C1orf112Q9NSG2 853 aa7.77□□□□□ -1.17
VPS53-204ENST00000437048 CTNND2Q9UQB3 1225 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms