RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 BRIP1Q9BX63 1249 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 NHEJ1Q9H9Q4 299 aaPredicted RBP8.95□□□□□ -0.98
HPS4-205ENST00000429411 MLXIPQ9HAP2 919 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 ATP8A2Q9NTI2 1148 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 BSDC1Q9NW68 430 aaPredicted RBP8.95□□□□□ -0.98
HPS4-205ENST00000429411 GJA3Q9Y6H8 435 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 ARFGEF2Q9Y6D5 1785 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 MRC1P22897 1456 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 BICDL2A1A5D9 508 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 TTC36A6NLP5 189 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 H0YHG0 523 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 TRIM66O15016 1216 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 LDHCP07864 332 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 GNA11P29992 359 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 BTDP43251 543 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 CKAP4Q07065 602 aaKnown RBP8.95□□□□□ -0.98
HPS4-205ENST00000429411 STK4Q13043 487 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 HAUS4Q9H6D7 363 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 ZNF287Q9HBT7 754 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 EHD2Q9NZN4 543 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 PPME1Q9Y570 386 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 NCK2O43639 380 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 ZRANB2O95218 330 aaKnown RBP eCLIP8.95□□□□□ -0.98
HPS4-205ENST00000429411 RASSF7Q02833 373 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 CALCRLQ16602 461 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 UBE2SQ16763 222 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 KCTD16Q68DU8 428 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 IQCEQ6IPM2 695 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 TMC4Q7Z404 712 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 P2RX5Q93086 422 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 TMEM47Q9BQJ4 181 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 SLC24A3Q9HC58 644 aa8.95□□□□□ -0.98
HPS4-205ENST00000429411 RNF40O75150 1001 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 MMP14P50281 582 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 PRPF4BQ13523 1007 aaKnown RBP8.94□□□□□ -0.98
HPS4-205ENST00000429411 IL17AQ16552 155 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 DALRD3Q5D0E6 543 aaKnown RBP8.94□□□□□ -0.98
HPS4-205ENST00000429411 ANKRD40Q6AI12 368 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 CCDC155Q8N6L0 562 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 EHBP1Q8NDI1 1231 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 ATL2Q8NHH9 583 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 AFAP1L1Q8TED9 768 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 RAB34Q9BZG1 259 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 ANKRD2Q9GZV1 360 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 TSPYL1Q9H0U9 437 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 ANKZF1Q9H8Y5 726 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 PIM2Q9P1W9 311 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 PNMA2Q9UL42 364 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 ATP1A2P50993 1020 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 GUCY2FP51841 1108 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 IRX5P78411 483 aaPredicted RBP8.94□□□□□ -0.98
HPS4-205ENST00000429411 TCP10Q12799 353 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 DCAF17Q5H9S7 520 aaPredicted RBP8.94□□□□□ -0.98
HPS4-205ENST00000429411 MFSD14BQ5SR56 506 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 CDKAL1Q5VV42 579 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 PRR5LQ6MZQ0 368 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 MAATS1Q7Z4T9 603 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 NEK8Q86SG6 692 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 POTEDQ86YR6 584 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 SPAG5Q96R06 1193 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 MTRQ99707 1265 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 LACRTQ9GZZ8 138 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 RNF181Q9P0P0 153 aa8.94□□□□□ -0.98
HPS4-205ENST00000429411 FAM237AA0A1B0GTK4 181 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 LGALS16A8MUM7 142 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 SCNN1DP51172 638 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 ODF2Q5BJF6 829 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 RSRC2Q7L4I2 434 aaKnown RBP8.93□□□□□ -0.98
HPS4-205ENST00000429411 ZNF804AQ7Z570 1209 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 KLHL7Q8IXQ5 586 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 WDR70Q9NW82 654 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 LAMA4Q16363 1823 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 EIF4A3P38919 411 aaKnown RBP8.93□□□□□ -0.98
HPS4-205ENST00000429411 GTF2IP78347 998 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 HERC4Q5GLZ8 1057 aaPredicted RBP8.93□□□□□ -0.98
HPS4-205ENST00000429411 NT5DC1Q5TFE4 455 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 CNNM4Q6P4Q7 775 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 GET4Q7L5D6 327 aaPredicted RBP8.93□□□□□ -0.98
HPS4-205ENST00000429411 TAF4BQ92750 862 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 NYXQ9GZU5 481 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.93□□□□□ -0.982e-6■■■■■ 76
HPS4-205ENST00000429411 PCDHA6Q9UN73 950 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 PCDHA8Q9Y5H6 950 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 ABCA3Q99758 1704 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 ESYT3A0FGR9 886 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 GOLGA6BA6NDN3 693 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 ZNF76P36508 570 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 TRAPPC10P48553 1259 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 PDXDC2PQ6P474 469 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 LIMA1Q9UHB6 759 aaKnown RBP8.93□□□□□ -0.98
HPS4-205ENST00000429411 CLEC11AQ9Y240 323 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 SCN11AQ9UI33 1791 aa8.93□□□□□ -0.98
HPS4-205ENST00000429411 GOLGA6CA6NDK9 693 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 FAM196BA6NMK8 535 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 USP17L5A8MUK1 530 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 TDP2O95551 362 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 FTCDO95954 541 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 GOLGA6DP0CG33 693 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 SNAP25P60880 206 aa8.92□□□□□ -0.98
HPS4-205ENST00000429411 POLR2FP61218 127 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms