RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 FAM153CQ494X1 144 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 KIAA0895Q8NCT3 520 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 ZNF507Q8TCN5 953 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 BRIP1Q9BX63 1249 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 FAM153AQ9UHL3 310 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 AGPSO00116 658 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 NONOQ15233 471 aaKnown RBP eCLIP13.84□□□□□ -0.19
CDH3-202ENST00000429102 GIMAP8Q8ND71 665 aaPredicted RBP13.84□□□□□ -0.19
CDH3-202ENST00000429102 OSBPL9Q96SU4 736 aa13.84□□□□□ -0.19
CDH3-202ENST00000429102 MYMKA6NI61 221 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 HSF2BPO75031 334 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 VAV2P52735 878 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 SEC24CP53992 1094 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 SNAP25P60880 206 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 PPP2R5BQ15173 497 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 ODF2Q5BJF6 829 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 DDX42Q86XP3 938 aaKnown RBP eCLIP13.83□□□□□ -0.19
CDH3-202ENST00000429102 TBC1D5Q92609 795 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 MTMR8Q96EF0 704 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 ALS2CR12Q96Q35 445 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 DNAJC7Q99615 494 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 PPANQ9NQ55 473 aaKnown RBP13.83□□□□□ -0.19
CDH3-202ENST00000429102 MYO1AQ9UBC5 1043 aa13.83□□□□□ -0.19
CDH3-202ENST00000429102 SMIM23A6NLE4 172 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 USP17L5A8MUK1 530 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 IRAK1P51617 712 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 SLC30A10Q6XR72 485 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 AP1M1Q9BXS5 423 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 PACSIN1Q9BY11 444 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 MKRN4PQ13434 485 aaPredicted RBP13.83□□□□□ -0.2
CDH3-202ENST00000429102 PRPF4BQ13523 1007 aaKnown RBP13.83□□□□□ -0.2
CDH3-202ENST00000429102 UBE4AQ14139 1066 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 PARP10Q53GL7 1025 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 FAM133AQ8N9E0 248 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 EYA3Q99504 573 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 THAP9Q9H5L6 903 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 MAD2L2Q9UI95 211 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 SNX12Q9UMY4 172 aa13.83□□□□□ -0.2
CDH3-202ENST00000429102 SHTN1A0MZ66 631 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 CALCRLQ16602 461 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 KCNK18Q7Z418 384 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 CREG2Q8IUH2 290 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 EHBP1Q8NDI1 1231 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 SETDB2Q96T68 719 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 LSM14BQ9BX40 385 aaKnown RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 SEPT11Q9NVA2 429 aaKnown RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 ZNF652Q9Y2D9 606 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 PDS5AQ29RF7 1337 aaKnown RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 SIPA1L3O60292 1781 aaPredicted RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 ATRNO75882 1429 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 BICDL2A1A5D9 508 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 MEIS1O00470 390 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 HEXIM1O94992 359 aaKnown RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 RIMBP2O15034 1052 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 PPFIA4O75335 1185 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 PALMO75781 387 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 ACTN1P12814 892 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 TAL1P17542 331 aaPredicted RBP13.82□□□□□ -0.2
CDH3-202ENST00000429102 TUBB2AQ13885 445 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 NFIXQ14938 502 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 VWA3BQ502W6 1294 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 NEK8Q86SG6 692 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 TUBB2BQ9BVA1 445 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 ANAPC4Q9UJX5 808 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 FAM169AQ9Y6X4 670 aa13.82□□□□□ -0.2
CDH3-202ENST00000429102 AKAP11Q9UKA4 1901 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 STXBP3O00186 592 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 SLC37A4O43826 429 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 RHOBTB3O94955 611 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 GLI1P08151 1106 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 TRAPPC10P48553 1259 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 DCAF17Q5H9S7 520 aaPredicted RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 MIIPQ5JXC2 388 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 CFAP58Q5T655 872 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 WDR93Q6P2C0 686 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 UHMK1Q8TAS1 419 aaKnown RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 FGFBP2Q9BYJ0 223 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 PSD3Q9NYI0 1048 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 JRKLQ9Y4A0 524 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 ZNF804BA4D1E1 1349 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 KIAA0753Q2KHM9 967 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 PAPD7Q5XG87 772 aaKnown RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 ARL6IP4Q66PJ3 421 aaKnown RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 TRIM58Q8NG06 486 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 DDX12PQ92771 950 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 C6orf50Q9HD87 102 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 KBTBD4Q9NVX7 518 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 BAZ2AQ9UIF9 1905 aaKnown RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 GNPATO15228 680 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 IRX3P78415 501 aaPredicted RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 NNTQ13423 1086 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 HERC4Q5GLZ8 1057 aaPredicted RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 TEX11Q8IYF3 940 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 REXO1Q8N1G1 1221 aaKnown RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 BSDC1Q9NW68 430 aaPredicted RBP13.81□□□□□ -0.2
CDH3-202ENST00000429102 FAM184BQ9ULE4 1060 aa13.81□□□□□ -0.2
CDH3-202ENST00000429102 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.81□□□□□ -0.2
CDH3-202ENST00000429102 C4AP0C0L4 1744 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 C4BP0C0L5 1744 aa13.8□□□□□ -0.2
CDH3-202ENST00000429102 FAM196BA6NMK8 535 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms