RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ZNF365Q70YC5 407 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 FBXO11Q86XK2 927 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.47□□□□□ -0.253e-7■■■□□ 14.7
SQSTM1-203ENST00000422245 MAFAQ8NHW3 353 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 SYTL5Q8TDW5 730 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 HERVK_113Q902F9 699 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 TIFAQ96CG3 184 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 JMJD4Q9H9V9 463 aa13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 U3KPZ7 1027 aaPredicted RBP13.47□□□□□ -0.25
SQSTM1-203ENST00000422245 UMODL1Q5DID0 1318 aa13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 TXNP10599 105 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 SEC23AQ15436 765 aa13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 MYLIPQ8WY64 445 aa13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 IWS1Q96ST2 819 aa13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 AMNQ9BXJ7 453 aa13.46□□□□□ -0.25
SQSTM1-203ENST00000422245 KIAA1217Q5T5P2 1943 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 PFKMP08237 780 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 CHMLP26374 656 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 CCL23P55773 120 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 GHRHRQ02643 423 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 PTPN11Q06124 597 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 RAB30Q15771 203 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 STXBP2Q15833 593 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 NFRKBQ6P4R8 1299 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 RALYLQ86SE5 291 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 RMDN3Q96TC7 470 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 WNT8AQ9H1J5 351 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 TRMT13Q9NUP7 481 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 COL20A1Q9P218 1284 aa13.45□□□□□ -0.26
SQSTM1-203ENST00000422245 ERICH2A1L162 156 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 PALM3A6NDB9 673 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 KLRF2D3W0D1 207 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 ZBTB5O15062 677 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 ARIH2O95376 493 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 GH1P01241 217 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 FGBP02675 491 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 CYP21A2P08686 494 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 HSD17B4P51659 736 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 TRAF1Q13077 416 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 SART3Q15020 963 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 NBPF20Q3BBV1 942 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 FAM47CQ5HY64 1035 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 ARHGEF16Q5VV41 709 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 CCDC62Q6P9F0 684 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 CYB5R4Q7L1T6 521 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 RPUSD2Q8IZ73 545 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 STAG2Q8N3U4 1231 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 COPS5Q92905 334 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 MTMR8Q96EF0 704 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 TAAR1Q96RJ0 339 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 PBX4Q9BYU1 374 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 ZNF576Q9H609 170 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 VAT1LQ9HCJ6 419 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 MAD2L2Q9UI95 211 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 TANC1Q9C0D5 1861 aa13.44□□□□□ -0.26
SQSTM1-203ENST00000422245 PITPNM1O00562 1244 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 IFIT3O14879 490 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 SGSM2O43147 1006 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 CFBP00751 764 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 EIF2AK2P19525 551 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 PTH1RQ03431 593 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 GRM4Q14833 912 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 GRIN2CQ14957 1233 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 SEPT14Q6ZU15 432 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 SAMD3Q8N6K7 520 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 NCOA7Q8NI08 942 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 TBC1D5Q92609 795 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 PXMP2Q9NR77 195 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 MAP3K20Q9NYL2 800 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 CXXC1Q9P0U4 656 aaPredicted RBP13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 MSRAQ9UJ68 235 aa13.43□□□□□ -0.26
SQSTM1-203ENST00000422245 GRXCR1A8MXD5 290 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 OPLAHO14841 1288 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 PPP1R11O60927 126 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 EIF3JO75822 258 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 NR3C2P08235 984 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 MMP3P08254 477 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 CYP2C9P11712 490 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 RFC2P35250 354 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 PBX2P40425 430 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 ARHGAP1Q07960 439 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 WTAPQ15007 396 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 OTOP2Q7RTS6 562 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 AFG1LQ8WV93 481 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 EMID1Q96A84 441 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 SCLYQ96I15 445 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 NOD1Q9Y239 953 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 PCDHA1Q9Y5I3 950 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 MRVI1Q9Y6F6 885 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 CDH23Q9H251 3354 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 A0A0C4DFX4 3053 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 GBF1Q92538 1859 aa13.42□□□□□ -0.26
SQSTM1-203ENST00000422245 E7EWF7 191 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 IRX6P78412 446 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 BFSP2Q13515 415 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 LY6KQ17RY6 165 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 SESTD1Q86VW0 696 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 HOMER1Q86YM7 354 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 CCDC155Q8N6L0 562 aa13.41□□□□□ -0.26
SQSTM1-203ENST00000422245 RETREG2Q8NC44 543 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms