RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 GOLGA8HP0CJ92 632 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 PDHBP11177 359 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 CHMP4BP1P59074 171 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 TCTN1Q2MV58 587 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 ANKRD45Q5TZF3 282 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 BTNL9Q6UXG8 535 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 TBC1D10CQ8IV04 446 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 TBC1D5Q92609 795 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 CTAGE1Q96RT6 745 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 MTIF3Q9H2K0 278 aaKnown RBP15.2■□□□□ 0.02
LINC00339-202ENST00000416769 PCDHA11Q9Y5I1 949 aa15.2■□□□□ 0.02
LINC00339-202ENST00000416769 COL4A4P53420 1690 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-202ENST00000416769 TRANK1O15050 2925 aa15.19■□□□□ 0.02
LINC00339-202ENST00000416769 RBM47A0AV96 593 aaKnown RBP15.19■□□□□ 0.02
LINC00339-202ENST00000416769 FGAP02671 866 aa15.19■□□□□ 0.02
LINC00339-202ENST00000416769 BMP1P13497 986 aa15.19■□□□□ 0.02
LINC00339-202ENST00000416769 RPS6P62753 249 aaKnown RBP15.19■□□□□ 0.02
LINC00339-202ENST00000416769 NUCB1Q02818 461 aa15.19■□□□□ 0.02
LINC00339-202ENST00000416769 GPNMBQ14956 572 aa15.19■□□□□ 0.02
LINC00339-202ENST00000416769 ZBTB47Q9UFB7 747 aaPredicted RBP15.19■□□□□ 0.02
LINC00339-202ENST00000416769 TOP1P11387 765 aaKnown RBP15.18■□□□□ 0.02
LINC00339-202ENST00000416769 EDNRBP24530 442 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 LRRFIP1Q32MZ4 808 aaKnown RBP15.18■□□□□ 0.02
LINC00339-202ENST00000416769 USH1GQ495M9 461 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 RNF207Q6ZRF8 634 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 RPUSD2Q8IZ73 545 aaKnown RBP15.18■□□□□ 0.02
LINC00339-202ENST00000416769 ZKSCAN3Q9BRR0 538 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 MTG1Q9BT17 334 aaPredicted RBP15.18■□□□□ 0.02
LINC00339-202ENST00000416769 COL20A1Q9P218 1284 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 MTCH2Q9Y6C9 303 aa15.18■□□□□ 0.02
LINC00339-202ENST00000416769 NEDD4P46934 1319 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 LCHNA4D1U4 455 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 IQCF3P0C7M6 154 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 TAP1Q03518 808 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 PDE4DQ08499 809 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 ZNF543Q08ER8 600 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 NMIQ13287 307 aaPredicted RBP15.17■□□□□ 0.02
LINC00339-202ENST00000416769 PPP2R5BQ15173 497 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 SKIV2LQ15477 1246 aaKnown RBP15.17■□□□□ 0.02
LINC00339-202ENST00000416769 TMEM67Q5HYA8 995 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 ARNTL2Q8WYA1 636 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 DHX38Q92620 1227 aaKnown RBP15.17■□□□□ 0.02
LINC00339-202ENST00000416769 UBA5Q9GZZ9 404 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 POLR3EQ9NVU0 708 aa15.17■□□□□ 0.02
LINC00339-202ENST00000416769 ADD3Q9UEY8 706 aaKnown RBP15.17■□□□□ 0.02
LINC00339-202ENST00000416769 TXNP10599 105 aaKnown RBP15.16■□□□□ 0.02
LINC00339-202ENST00000416769 HSPD1P10809 573 aaKnown RBP15.16■□□□□ 0.02
LINC00339-202ENST00000416769 CPT1AP50416 773 aa15.16■□□□□ 0.02
LINC00339-202ENST00000416769 ALX1Q15699 326 aa15.16■□□□□ 0.02
LINC00339-202ENST00000416769 A6NJR5 290 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 LPXNO60711 386 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 SNHG28P0DPA3 235 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 PDE1AP54750 535 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 LY6KQ17RY6 165 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 GDF6Q6KF10 455 aaPredicted RBP15.15■□□□□ 0.02
LINC00339-202ENST00000416769 HERC6Q8IVU3 1022 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 AFG1LQ8WV93 481 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 KAT2BQ92831 832 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 KHSRPQ92945 711 aaKnown RBP eCLIP15.15■□□□□ 0.02
LINC00339-202ENST00000416769 WNT8BQ93098 351 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 EVI5LQ96CN4 794 aa15.15■□□□□ 0.02
LINC00339-202ENST00000416769 FTOQ9C0B1 505 aaKnown RBP eCLIP15.15■□□□□ 0.02
LINC00339-202ENST00000416769 SORBS3O60504 671 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 SUPT20HL2P0C7V6 817 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 DEFB103AP81534 67 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 GRB10Q13322 594 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 PPP4R3BQ5MIZ7 849 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 CCDC62Q6P9F0 684 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 SEPT14Q6ZU15 432 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 CHST3Q7LGC8 479 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 SCFD2Q8WU76 684 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 TAAR1Q96RJ0 339 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 EPHX3Q9H6B9 360 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 GPHNQ9NQX3 736 aaPredicted RBP15.14■□□□□ 0.01
LINC00339-202ENST00000416769 HELLSQ9NRZ9 838 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 TCP11L1Q9NUJ3 509 aa15.14■□□□□ 0.01
LINC00339-202ENST00000416769 PFKMP08237 780 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 MMP3P08254 477 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 ARHGAP1Q07960 439 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 HIC1Q14526 733 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 PTGISQ16647 500 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 MCMDC2Q4G0Z9 681 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 NFRKBQ6P4R8 1299 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 IL27Q8NEV9 243 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 GDPD5Q8WTR4 605 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 SEZ6LQ9BYH1 1024 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 LNPKQ9C0E8 428 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 KIAA1217Q5T5P2 1943 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 WDR19Q8NEZ3 1342 aa15.13■□□□□ 0.01
LINC00339-202ENST00000416769 MYH6P13533 1939 aa15.12■□□□□ 0.01
LINC00339-202ENST00000416769 ZNF200P98182 395 aaPredicted RBP15.12■□□□□ 0.01
LINC00339-202ENST00000416769 CDC37Q16543 378 aaPredicted RBP15.12■□□□□ 0.01
LINC00339-202ENST00000416769 SYTL5Q8TDW5 730 aaPredicted RBP15.12■□□□□ 0.01
LINC00339-202ENST00000416769 SLC9A7Q96T83 725 aa15.12■□□□□ 0.01
LINC00339-202ENST00000416769 MTUS1Q9ULD2 1270 aa15.12■□□□□ 0.01
LINC00339-202ENST00000416769 CCDC171Q6TFL3 1326 aa15.12■□□□□ 0.01
LINC00339-202ENST00000416769 LAMA4Q16363 1823 aa15.11■□□□□ 0.01
LINC00339-202ENST00000416769 PITPNM1O00562 1244 aa15.11■□□□□ 0.01
LINC00339-202ENST00000416769 NBNO60934 754 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms