RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 CKAP4Q07065 602 aaKnown RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 PABPC4Q13310 644 aaKnown RBP eCLIP9.22□□□□□ -0.93
SNX13-201ENST00000409076 NONOQ15233 471 aaKnown RBP eCLIP9.22□□□□□ -0.93
SNX13-201ENST00000409076 GJB7Q6PEY0 223 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 DPP8Q6V1X1 898 aaPredicted RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 PACS2Q86VP3 889 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 OTUD6BQ8N6M0 293 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 RBM12Q9NTZ6 932 aaKnown RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 ARPP21Q9UBL0 812 aaPredicted RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 PCDHA13Q9Y5I0 950 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 ABCC12Q96J65 1359 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 CACNA1FO60840 1977 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 NALCNQ8IZF0 1738 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 GOLGA6L7A0A1B0GV03 622 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 MYO1FO00160 1098 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 IVLP07476 585 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 OR52Z1P0C646 297 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 ATP2C1P98194 919 aaPredicted RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 NFIXQ14938 502 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 KRT79Q5XKE5 535 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 VGLL2Q8N8G2 317 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 CARD10Q9BWT7 1032 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 HAUS4Q9H6D7 363 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 RBM28Q9NW13 759 aaKnown RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 KIAA1024Q9UPX6 916 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 SETD1AO15047 1707 aaKnown RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 PALMO75781 387 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 ERLIN2O94905 339 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 INPP5BP32019 993 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 SARSP49591 514 aaKnown RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 USP14P54578 494 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 KLHL30Q0D2K2 578 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 ZNF211Q13398 564 aaPredicted RBP9.22□□□□□ -0.93
SNX13-201ENST00000409076 TMEM266Q2M3C6 531 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 CAPN12Q6ZSI9 719 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 FAM71BQ8TC56 605 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 TSG101Q99816 390 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 TMEM47Q9BQJ4 181 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 BCAS3Q9H6U6 928 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 ZNF652Q9Y2D9 606 aa9.22□□□□□ -0.93
SNX13-201ENST00000409076 LGALS16A8MUM7 142 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 H7C1D1 291 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 LRRN2O75325 713 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 FAM153BP0C7A2 387 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 CALML3P27482 149 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 BTDP43251 543 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 GTF2IP78347 998 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 SEC23AQ15436 765 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 FAM153CQ494X1 144 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 REXO1Q8N1G1 1221 aaKnown RBP9.21□□□□□ -0.93
SNX13-201ENST00000409076 TSEN2Q8NCE0 465 aaKnown RBP9.21□□□□□ -0.93
SNX13-201ENST00000409076 CTNNBL1Q8WYA6 563 aaPredicted RBP9.21□□□□□ -0.93
SNX13-201ENST00000409076 DDX47Q9H0S4 455 aaKnown RBP9.21□□□□□ -0.93
SNX13-201ENST00000409076 C6orf50Q9HD87 102 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 FAM153AQ9UHL3 310 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 HPCAL4Q9UM19 191 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 PCDHA4Q9UN74 947 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 MYH13Q9UKX3 1938 aa9.21□□□□□ -0.93
SNX13-201ENST00000409076 TMOD1P28289 359 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 DNM2P50570 870 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 VAV2P52735 878 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 CT47A1Q5JQC4 288 aaPredicted RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 PAIP2Q9BPZ3 127 aaKnown RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 NAA15Q9BXJ9 866 aaKnown RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 PCDHA6Q9UN73 950 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 PCDHA8Q9Y5H6 950 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 SSTR3P32745 418 aaPredicted RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 SETQ01105 290 aaPredicted RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 NNTQ13423 1086 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 TBC1D31Q96DN5 1066 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 LIMA1Q9UHB6 759 aaKnown RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 RTCBQ9Y3I0 505 aaKnown RBP9.21□□□□□ -0.94
SNX13-201ENST00000409076 MYH2Q9UKX2 1941 aa9.21□□□□□ -0.94
SNX13-201ENST00000409076 PRPF6O94906 941 aaKnown RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 RPSAP08865 295 aaKnown RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 HOXA13P31271 388 aaPredicted RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 SHROOM1Q2M3G4 852 aaPredicted RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 FAM182AQ5T1J6 154 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 PDXDC2PQ6P474 469 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 U2AF1L4Q8WU68 220 aaKnown RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.2□□□□□ -0.94
SNX13-201ENST00000409076 SPIRE2Q8WWL2 714 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 NGLY1Q96IV0 654 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 NDST4Q9H3R1 872 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 FAM169AQ9Y6X4 670 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 LOC102724159A0A0B4J2E5 919 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 POTEB3A0JP26 581 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 POTECB2RU33 542 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 TUBB4AP04350 444 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 PWP2Q15269 919 aaKnown RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 PFKFB3Q16875 520 aaPredicted RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 CDKAL1Q5VV42 579 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 WDR59Q6PJI9 974 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 POTEBQ6S5H4 581 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 DAAM2Q86T65 1068 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.2□□□□□ -0.94
SNX13-201ENST00000409076 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.2□□□□□ -0.94
SNX13-201ENST00000409076 NFAT5O94916 1531 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 MYMKA6NI61 221 aa9.2□□□□□ -0.94
SNX13-201ENST00000409076 RBAK-RBAKDNI3L0D1 243 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms