RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 LRRC41Q15345 812 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 OXER1Q8TDS5 423 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 EIF3BP55884 814 aaKnown RBP12.1□□□□□ -0.47
HPS4-202ENST00000398145 MUM1Q2TAK8 710 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 HNRNPLLQ8WVV9 542 aaKnown RBP12.1□□□□□ -0.47
HPS4-202ENST00000398145 FNBP1Q96RU3 617 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 ZNF609O15014 1411 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 NCAPD2Q15021 1401 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 TROVE2P10155 538 aaKnown RBP eCLIP12.1□□□□□ -0.47
HPS4-202ENST00000398145 LRRC63Q05C16 580 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 REXO1L1PQ8IX06 675 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 IQGAP1P46940 1657 aa12.1□□□□□ -0.47
HPS4-202ENST00000398145 THAP12O43422 761 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 ATP1A1P05023 1023 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 VPS41P49754 854 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 SMTNP53814 917 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 NR1I3Q14994 352 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 RAD9BQ6WBX8 426 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 FAM133AQ8N9E0 248 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CCDC110Q8TBZ0 833 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 STAG1Q8WVM7 1258 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 MTA3Q9BTC8 594 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 TXNDC16Q9P2K2 825 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 RTCBQ9Y3I0 505 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 ZCCHC11Q5TAX3 1644 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 PASKQ96RG2 1323 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 PLEKHA8P1O95397 391 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CTDNEP1O95476 244 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 FDPSP14324 419 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 FERP16591 822 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 RCAN1P53805 252 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 RASGRF1Q13972 1273 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 C10orf76Q5T2E6 689 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.09□□□□□ -0.47
HPS4-202ENST00000398145 FMO2Q99518 471 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 PSTPIP2Q9H939 334 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 BTG4Q9NY30 223 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 ADD3Q9UEY8 706 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 DDX25Q9UHL0 483 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 AGTPBP1Q9UPW5 1226 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 PLAAQ9Y263 795 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 NEDD4P46934 1319 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 A0A1W2PQC6 194 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 LMNB1P20700 586 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CYP2J2P51589 502 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CCDC13Q8IYE1 715 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 NEK9Q8TD19 979 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 OSBPL9Q96SU4 736 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 TYW1Q9NV66 732 aaKnown RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 PALLDQ8WX93 1383 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CCDC188H7C350 402 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 UFL1O94874 794 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 CHGBP05060 677 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 ADCY8P40145 1251 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 FXR1P51114 621 aaKnown RBP eCLIP12.09□□□□□ -0.47
HPS4-202ENST00000398145 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 FUT8Q9BYC5 575 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 VPS37BQ9H9H4 285 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 FBXO2Q9UK22 296 aaPredicted RBP12.09□□□□□ -0.47
HPS4-202ENST00000398145 CD2APQ9Y5K6 639 aa12.09□□□□□ -0.47
HPS4-202ENST00000398145 HEG1Q9ULI3 1381 aa12.08□□□□□ -0.47
HPS4-202ENST00000398145 MSANTD4Q8NCY6 345 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 P3H4Q92791 437 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 GJA10Q969M2 543 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 KIAA1024Q9UPX6 916 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 HECW2Q9P2P5 1572 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 TRIM37O94972 964 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 DYNLL1P63167 89 aaKnown RBP12.08□□□□□ -0.48
HPS4-202ENST00000398145 RABL6Q3YEC7 729 aaPredicted RBP12.08□□□□□ -0.48
HPS4-202ENST00000398145 MAEAQ7L5Y9 396 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 NLRP10Q86W26 655 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 SPATA4Q8NEY3 305 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 TTLL11Q8NHH1 800 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 TBCKQ8TEA7 893 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 CHP1Q99653 195 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 SPATS2LQ9NUQ6 558 aaKnown RBP12.08□□□□□ -0.48
HPS4-202ENST00000398145 PXDNLA1KZ92 1463 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 HOXA7P31268 230 aaPredicted RBP12.08□□□□□ -0.48
HPS4-202ENST00000398145 TMTC3Q6ZXV5 915 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 PKD2L1Q9P0L9 805 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 EXOC7Q9UPT5 735 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 USTQ9Y2C2 406 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 ALKQ9UM73 1620 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 ADGRL3Q9HAR2 1447 aa12.08□□□□□ -0.48
HPS4-202ENST00000398145 ALX1Q15699 326 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 NBPF9Q3BBW0 867 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 AP1ARQ63HQ0 302 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 PHLDB3Q6NSJ2 640 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 ALKBH5Q6P6C2 394 aaKnown RBP12.07□□□□□ -0.48
HPS4-202ENST00000398145 TPH2Q8IWU9 490 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 GRK7Q8WTQ7 553 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 MMS19Q96T76 1030 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 PSMD2Q13200 908 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 PHLDB2Q86SQ0 1253 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 DDX17Q92841 729 aaKnown RBP12.07□□□□□ -0.48
HPS4-202ENST00000398145 NGLY1Q96IV0 654 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 AP1M1Q9BXS5 423 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 VCX3BQ9H321 246 aa12.07□□□□□ -0.48
HPS4-202ENST00000398145 MLXIPQ9HAP2 919 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms