RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GRAMD4Q6IC98 578 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 KRT26Q7Z3Y9 468 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 LARP4BQ92615 738 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 MRPL46Q9H2W6 279 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 MAN1B1Q9UKM7 699 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 APOEP02649 317 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PDE6BP35913 854 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 FBXO11Q86XK2 927 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 ZBTB8OSQ8IWT0 167 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 ORAI2Q96SN7 254 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PARD6BQ9BYG5 372 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 GPHNQ9NQX3 736 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 TTLL3Q9Y4R7 772 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 ZNF521Q96K83 1311 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 MYO1FO00160 1098 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 POLR2MP0CAP2 368 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 IFNAR2P48551 515 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 CLCN6P51797 869 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 GABPAQ06546 454 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 TRIM50Q86XT4 487 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 TEKT3Q9BXF9 490 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 CNOT10Q9H9A5 744 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 DNAJC5BQ9UF47 199 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PNMA2Q9UL42 364 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 TNNC2P02585 160 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PHKG2P15735 406 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ZBED6P86452 979 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 CCDC93Q567U6 631 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 XKR9Q5GH70 373 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 TTC19Q6DKK2 380 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 CAPN12Q6ZSI9 719 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PANX2Q96RD6 677 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ADAMTS12P58397 1594 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 SART1O43290 800 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ZRANB2O95218 330 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PSMD7P51665 324 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 FKBP3Q00688 224 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ALS2CLQ60I27 953 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ZNF280CQ8ND82 737 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 CDKL2Q92772 493 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 GJA10Q969M2 543 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 TRIM11Q96F44 468 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 CCDC68Q9H2F9 335 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ATP7AQ04656 1500 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 UBAP1LF5GYI3 381 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PPP1R12AO14974 1030 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 GARSP41250 739 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 GYG1P46976 350 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 MYL7Q01449 175 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PTK2Q05397 1052 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 TTLL7Q6ZT98 887 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 TRIM42Q8IWZ5 723 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ANKRD35Q8N283 1001 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 PBKQ96KB5 322 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 ACTR5Q9H9F9 607 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 RWDD2AQ9UIY3 292 aa11.15□□□□□ -0.62
LIMCH1-203ENST00000396595 EIF3CLB5ME19 914 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 PDE8BO95263 885 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 BCAMP50895 628 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 SCYL2Q6P3W7 929 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 EIF3CQ99613 913 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 STK17AQ9UEE5 414 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 PAIP2BQ9ULR5 123 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 PCDHA4Q9UN74 947 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 NOD1Q9Y239 953 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 FRMPD2Q68DX3 1309 aaPredicted RBP11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 AATKQ6ZMQ8 1374 aa11.15□□□□□ -0.63
LIMCH1-203ENST00000396595 NR2F2P24468 414 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 KIF11P52732 1056 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 YARSP54577 528 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 MESDQ14696 234 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 NXNQ6DKJ4 435 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 PLA2G4DQ86XP0 818 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 HACE1Q8IYU2 909 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 SPDL1Q96EA4 605 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 NT5C1BQ96P26 610 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 LOC102724159A0A0B4J2E5 919 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 INHBAP08476 426 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GAP43P17677 238 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 MFAP3P55082 362 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8FQ08AF8 430 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8DPQ0D2H9 430 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 RESTQ13127 1097 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 PWP2Q15269 919 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 E2F5Q15329 346 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 CCDC127Q96BQ5 260 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 ARHGEF9O43307 516 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GOLGA8HP0CJ92 632 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GLG1Q92896 1179 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 HESX1Q9UBX0 185 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 DYTNA2CJ06 578 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 AFPP02771 609 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 GTF2IP78347 998 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 DLGAP5Q15398 846 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 C10orf76Q5T2E6 689 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 ARHGEF18Q6ZSZ5 1173 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 MAP7D3Q8IWC1 876 aa11.14□□□□□ -0.63
LIMCH1-203ENST00000396595 LARGE2Q8N3Y3 721 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms