RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RNF207Q6ZRF8 634 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 CPVLQ9H3G5 476 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 C6orf50Q9HD87 102 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 MCM3APO60318 1980 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 IGKV6D-21A0A0A0MT36 114 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 JAK2O60674 1132 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 RXRAP19793 462 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 SEMA3FQ13275 785 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 C1orf53Q5VUE5 145 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 FAM43BQ6ZT52 329 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KRT25Q7Z3Z0 450 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 BLIDQ8IZY5 108 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KCTD17Q8N5Z5 321 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KLHDC9Q8NEP7 349 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 TRPV1Q8NER1 839 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KCNN1Q92952 543 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 PHKBQ93100 1093 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 KCNMB3Q9NPA1 279 aa8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ORC3Q9UBD5 711 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 ADD3Q9UEY8 706 aaKnown RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 CIZ1Q9ULV3 898 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-202ENST00000394943 MEIS1O00470 390 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 HMGCRP04035 888 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 GCFC2P16383 781 aaKnown RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 CCT2P78371 535 aaKnown RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 MRPS9P82933 396 aaKnown RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 RESTQ13127 1097 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 NECAB1Q8N987 351 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 NSUN6Q8TEA1 469 aaKnown RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 TRIB2Q92519 343 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 TINF2Q9BSI4 451 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 SLC26A6Q9BXS9 759 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 PSTPIP2Q9H939 334 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 PRKCZQ05513 592 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 CCDC83Q8IWF9 413 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 ANKLE1Q8NAG6 615 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 JADE2Q9NQC1 790 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 KIF3AQ9Y496 699 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 POTEFA5A3E0 1075 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 SMCO2A6NFE2 343 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 EIF3JO75822 258 aaKnown RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 MNX1P50219 401 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 BAATQ14032 418 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-202ENST00000394943 KRT40Q6A162 431 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 IQSEC1Q6DN90 963 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 ALG1Q9BT22 464 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 OGDHLQ9ULD0 1010 aa8.05□□□□□ -1.12
LIMA1-202ENST00000394943 DOCK5Q9H7D0 1870 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 BRD1O95696 1058 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 PDCP20941 246 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 SETQ01105 290 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-202ENST00000394943 KCTD2Q14681 263 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 LHX8Q68G74 356 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 CCDC174Q6PII3 467 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 BRAPQ7Z569 592 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 SLC43A3Q8NBI5 491 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 ETNPPLQ8TBG4 499 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 MTMR9Q96QG7 549 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 TSEN34Q9BSV6 310 aaKnown RBP8.04□□□□□ -1.12
LIMA1-202ENST00000394943 MTMR6Q9Y217 621 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 COL4A6Q14031 1691 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 B4DLN1 442 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 DHX15O43143 795 aaKnown RBP8.04□□□□□ -1.12
LIMA1-202ENST00000394943 XBP1P17861 261 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 MUTP22033 750 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 GJB2P29033 226 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 PRPHP41219 470 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 GJA9P57773 515 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 SESTD1Q86VW0 696 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 TBC1D5Q92609 795 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 SLC5A5Q92911 643 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 TAAR1Q96RJ0 339 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 ANO3Q9BYT9 981 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 ABHD16BQ9H3Z7 469 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 EHMT1Q9H9B1 1298 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 TSHZ2Q9NRE2 1034 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 MSCO60682 206 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 PEX10O60683 326 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 KRT2P35908 639 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 FLT3LGP49771 235 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 CMTR1Q8N1G2 835 aaKnown RBP8.04□□□□□ -1.12
LIMA1-202ENST00000394943 RDM1Q8NG50 284 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 MXRA8Q9BRK3 442 aa8.04□□□□□ -1.12
LIMA1-202ENST00000394943 LAD1O00515 517 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 TNPO2O14787 897 aaKnown RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 LGR5O75473 907 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 ALAS1P13196 640 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 KCNA2P16389 499 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 CCND2P30279 289 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 SNAP25P60880 206 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 SNX17Q15036 470 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 ARMCX2Q7L311 632 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 ZSCAN16Q9H4T2 348 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 ZDHHC9Q9Y397 364 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 FAM237AA0A1B0GTK4 181 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 ADAMTS4O75173 837 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 COL6A1P12109 1028 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 TOB1P50616 345 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 LBX1P52954 281 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms