RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ALG3Q92685 438 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 COPS5Q92905 334 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 APBA2Q99767 749 aa3.69□□□□□ -1.82
VPS13A-206ENST00000376646 TMEFF2Q9UIK5 374 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-206ENST00000376646 SSBP05455 408 aaKnown RBP eCLIP3.68□□□□□ -1.82
VPS13A-206ENST00000376646 CORO7P57737 925 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FOXO4P98177 505 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 TMEM151BQ8IW70 566 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 ZNF526Q8TF50 670 aaPredicted RBP3.68□□□□□ -1.82
VPS13A-206ENST00000376646 MRGPRX3Q96LB0 322 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 MARCH2Q9P0N8 246 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 ITGAVP06756 1048 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FPR2P25090 351 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 CCDC103Q8IW40 242 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 TRIM59Q8IWR1 403 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FAM178BQ8IXR5 827 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FNIP1Q8TF40 1166 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FRS2Q8WU20 508 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 NOX5Q96PH1 765 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 ACTR10Q9NZ32 417 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 STRIP2Q9ULQ0 834 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 FAN1Q9Y2M0 1017 aa3.68□□□□□ -1.82
VPS13A-206ENST00000376646 NOP56O00567 594 aaKnown RBP3.67□□□□□ -1.82
VPS13A-206ENST00000376646 DDAH1O94760 285 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 TCF3P15923 654 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 PFKLP17858 780 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 ECI1P42126 302 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 SV2CQ496J9 727 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 VWA3BQ502W6 1294 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 WWC2Q6AWC2 1192 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 CABP7Q86V35 215 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 LINC01356Q8N9X3 169 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 PLEKHO2Q8TD55 490 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.67□□□□□ -1.821e-9■□□□□ 10.1
VPS13A-206ENST00000376646 ZNF408Q9H9D4 720 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 FBXL7Q9UJT9 491 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 NCAPHQ15003 741 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 STK32CQ86UX6 486 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 ZNF227Q86WZ6 799 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 SMARCC2Q8TAQ2 1214 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 RELTQ969Z4 430 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 SPATA25Q9BR10 227 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 NKX2-4Q9H2Z4 354 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 ST7Q9NRC1 585 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 PMF1-BGLAPU3KQ54 211 aa3.67□□□□□ -1.82
VPS13A-206ENST00000376646 NPHS1O60500 1241 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 FOXD2O60548 495 aaPredicted RBP3.66□□□□□ -1.82
VPS13A-206ENST00000376646 SASH1O94885 1247 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 DNAJA1P31689 397 aaKnown RBP3.66□□□□□ -1.82
VPS13A-206ENST00000376646 GRIA2P42262 883 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 TARBP2Q15633 366 aaKnown RBP3.66□□□□□ -1.82
VPS13A-206ENST00000376646 FAM26EQ8N5C1 309 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 NPLOC4Q8TAT6 608 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 DDX11Q96FC9 970 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 TINF2Q9BSI4 451 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 LRP2BPQ9P2M1 347 aa3.66□□□□□ -1.82
VPS13A-206ENST00000376646 SUSD5O60279 629 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 GJB6O95452 261 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 FGRP09769 529 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 NCAM1P13591 858 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 LCP1P13796 627 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 RBM25P49756 843 aaKnown RBP3.65□□□□□ -1.82
VPS13A-206ENST00000376646 SLURP1P55000 103 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 DLX2Q07687 328 aaPredicted RBP3.65□□□□□ -1.82
VPS13A-206ENST00000376646 SMAD4Q13485 552 aaKnown RBP3.65□□□□□ -1.82
VPS13A-206ENST00000376646 NFIXQ14938 502 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 DENND5AQ6IQ26 1287 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 POMZP3Q6PJE2 187 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 NLRP10Q86W26 655 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 MCF2L2Q86YR7 1114 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 CELF2-AS1Q8N7Q2 184 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 HNRNPLLQ8WVV9 542 aaKnown RBP3.65□□□□□ -1.82
VPS13A-206ENST00000376646 TSPAN17Q96FV3 270 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 CYP26B1Q9NR63 512 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.65□□□□□ -1.82
VPS13A-206ENST00000376646 PRKAG3Q9UGI9 489 aa3.65□□□□□ -1.82
VPS13A-206ENST00000376646 C22orf46C9J442 243 aa3.65□□□□□ -1.83
VPS13A-206ENST00000376646 SNRPB2P08579 225 aaKnown RBP3.65□□□□□ -1.83
VPS13A-206ENST00000376646 BCL6P41182 706 aa3.65□□□□□ -1.83
VPS13A-206ENST00000376646 HTRA3P83110 453 aa3.65□□□□□ -1.83
VPS13A-206ENST00000376646 PEX11GQ96HA9 241 aa3.65□□□□□ -1.83
VPS13A-206ENST00000376646 MMP19Q99542 508 aa3.65□□□□□ -1.83
VPS13A-206ENST00000376646 CCDC9Q9Y3X0 531 aaKnown RBP3.65□□□□□ -1.83
VPS13A-206ENST00000376646 SGSM2O43147 1006 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 PRICKLE3O43900 615 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-206ENST00000376646 C8BP07358 591 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 KCNJ6P48051 423 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 B3GNT8Q7Z7M8 397 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 VPS37DQ86XT2 251 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 NETO2Q8NC67 525 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 KREMEN2Q8NCW0 462 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 TRBV23OR9-2A0A075B6M9 112 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 ZNF143P52747 638 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-206ENST00000376646 LIPIQ6XZB0 460 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 CEP68Q76N32 757 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 SAPCD2Q86UD0 394 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 SP8Q8IXZ3 490 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 CRACR2BQ8N4Y2 399 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-206ENST00000376646 TMEM145Q8NBT3 493 aa3.64□□□□□ -1.83
VPS13A-206ENST00000376646 RCBTB1Q8NDN9 531 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms