RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LOC102724428A0A0B4J2F2 783 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 SIK1P57059 783 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 ITPK1Q13572 414 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 GLE1Q53GS7 698 aaKnown RBP23.45■■□□□ 1.34
UPF3A-202ENST00000375299 GALNT17Q6IS24 598 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 CNNM4Q6P4Q7 775 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 STAG2Q8N3U4 1231 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 CRNKL1Q9BZJ0 848 aaKnown RBP23.45■■□□□ 1.34
UPF3A-202ENST00000375299 FAM207AQ9NSI2 230 aaPredicted RBP23.45■■□□□ 1.34
UPF3A-202ENST00000375299 ARPP21Q9UBL0 812 aaPredicted RBP23.45■■□□□ 1.34
UPF3A-202ENST00000375299 SAMM50Q9Y512 469 aa23.45■■□□□ 1.34
UPF3A-202ENST00000375299 ATXN2Q99700 1313 aaKnown RBP23.45■■□□□ 1.34
UPF3A-202ENST00000375299 NCK2O43639 380 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 MAGEA1P43355 309 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 UBE4AQ14139 1066 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 CAVIN4Q5BKX8 364 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 KIAA0895Q8NCT3 520 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 NSUN4Q96CB9 384 aaKnown RBP23.44■■□□□ 1.34
UPF3A-202ENST00000375299 SEMA6BQ9H3T3 888 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 RBM12Q9NTZ6 932 aaKnown RBP23.44■■□□□ 1.34
UPF3A-202ENST00000375299 PDCLQ13371 301 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 TXNRD1Q16881 649 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 SWT1Q5T5J6 900 aaKnown RBP23.44■■□□□ 1.34
UPF3A-202ENST00000375299 ACSBG1Q96GR2 724 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 NDST4Q9H3R1 872 aa23.44■■□□□ 1.34
UPF3A-202ENST00000375299 MYH14Q7Z406 1995 aaKnown RBP23.44■■□□□ 1.34
UPF3A-202ENST00000375299 CEP89Q96ST8 783 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 TLR10Q9BXR5 811 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 ATP8A2Q9NTI2 1148 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 SALL4Q9UJQ4 1053 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 WTIPA6NIX2 430 aaPredicted RBP23.43■■□□□ 1.34
UPF3A-202ENST00000375299 LRRC53A6NM62 1247 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 NDUFAB1O14561 156 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 OR52Z1P0C646 297 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 AMPD3Q01432 767 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 GRM4Q14833 912 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 SBK1Q52WX2 424 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 CENPPQ6IPU0 288 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 B4GALNT4Q76KP1 1039 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 PNMA1Q8ND90 353 aa23.43■■□□□ 1.34
UPF3A-202ENST00000375299 GEMIN8Q9NWZ8 242 aaKnown RBP23.43■■□□□ 1.34
UPF3A-202ENST00000375299 APBA1Q02410 837 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 MAN2A1Q16706 1144 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 TMED8Q6PL24 325 aaPredicted RBP23.42■■□□□ 1.34
UPF3A-202ENST00000375299 IFT20Q8IY31 132 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 MMRN2Q9H8L6 949 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 TSKSQ9UJT2 592 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 STXBP3O00186 592 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 GNAQP50148 359 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 KLHDC7AQ5VTJ3 777 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 RRAGAQ7L523 313 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 HEATR3Q7Z4Q2 680 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 HPS3Q969F9 1004 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 GDF3Q9NR23 364 aa23.42■■□□□ 1.34
UPF3A-202ENST00000375299 HNRNPH1P31943 449 aaKnown RBP23.41■■□□□ 1.34
UPF3A-202ENST00000375299 MECOMQ03112 1051 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 DDB1Q16531 1140 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 CCDC84Q86UT8 332 aaPredicted RBP23.41■■□□□ 1.34
UPF3A-202ENST00000375299 DGKHQ86XP1 1220 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 SH2D3CQ8N5H7 860 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 NOX5Q96PH1 765 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 CDCA7Q9BWT1 371 aaPredicted RBP23.41■■□□□ 1.34
UPF3A-202ENST00000375299 BARHL2Q9NY43 387 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 MAD2L2Q9UI95 211 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 ABCB11O95342 1321 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 CLSTN1O94985 981 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 ADAMTS2O95450 1211 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 CFAP221Q4G0U5 840 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 FBXW10Q5XX13 1052 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 KDM7AQ6ZMT4 941 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 BAP1Q92560 729 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 MTMR8Q96EF0 704 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 FAM84BQ96KN1 310 aaPredicted RBP23.41■■□□□ 1.34
UPF3A-202ENST00000375299 CCDC43Q96MW1 224 aaKnown RBP23.41■■□□□ 1.34
UPF3A-202ENST00000375299 SLC39A2Q9NP94 309 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 RNF14Q9UBS8 474 aa23.41■■□□□ 1.34
UPF3A-202ENST00000375299 SLC35G1Q2M3R5 365 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 ASTE1Q2TB18 679 aaPredicted RBP23.4■■□□□ 1.34
UPF3A-202ENST00000375299 CFAP58Q5T655 872 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 SPATS2Q86XZ4 545 aaKnown RBP23.4■■□□□ 1.34
UPF3A-202ENST00000375299 CNPY4Q8N129 248 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 RNF10Q8N5U6 811 aaKnown RBP23.4■■□□□ 1.34
UPF3A-202ENST00000375299 KRT14P02533 472 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 ATP1A2P50993 1020 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 TFAP4Q01664 338 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 KCTD16Q68DU8 428 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 KCNV1Q6PIU1 500 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 IQCKQ8N0W5 287 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 ANKRD13CQ8N6S4 541 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 IL17RBQ9NRM6 502 aa23.4■■□□□ 1.34
UPF3A-202ENST00000375299 ZEB2O60315 1214 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 USP8P40818 1118 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 RASSF7Q02833 373 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 GFPT1Q06210 699 aaPredicted RBP23.39■■□□□ 1.33
UPF3A-202ENST00000375299 PAK2Q13177 524 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 PDXDC1Q6P996 788 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 GPIHBP1Q8IV16 184 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 MS4A14Q96JA4 679 aa23.39■■□□□ 1.33
UPF3A-202ENST00000375299 SSU72P8A0A1W2PR75 194 aa23.38■■□□□ 1.33
UPF3A-202ENST00000375299 BUB1O43683 1085 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms