RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ANXA1P04083 346 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 VPS41P49754 854 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 ESRRGP62508 458 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 PPARAQ07869 468 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 CUL1Q13616 776 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 TRAPPC3LQ5T215 181 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 CDC37L1Q7L3B6 337 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 DBNDD2Q9BQY9 259 aa9.71□□□□□ -0.86
SYNE1-209ENST00000367257 RNF26Q9BY78 433 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-209ENST00000367257 NOP56O00567 594 aaKnown RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 TXNDC9O14530 226 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 GYS2P54840 703 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 MFAP3P55082 362 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 CENPKQ9BS16 269 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 SERTAD1Q9UHV2 236 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ANGPTL2Q9UKU9 493 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 RASSF10A6NK89 507 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 SPECC1L-ADORA2AF8WAN1 911 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 MTMR6Q9Y217 621 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 TYW1BQ6NUM6 668 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 RAB44Q7Z6P3 723 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ARHGAP18Q8N392 663 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 BBS5Q8N3I7 341 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 PANX2Q96RD6 677 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ZSCAN10Q96SZ4 725 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 PLEKHA4Q9H4M7 779 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ARMT1Q9H993 441 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 UTP6Q9NYH9 597 aaKnown RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 NSFL1CQ9UNZ2 370 aaKnown RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 NOC2LQ9Y3T9 749 aaKnown RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ERVK-7P63135 1459 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ZNF233A6NK53 670 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 ADCY8P40145 1251 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 PABPC4Q13310 644 aaKnown RBP eCLIP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 SURF1Q15526 300 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 EMBQ6PCB8 327 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 U2AF1L4Q8WU68 220 aaKnown RBP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 CCDC17Q96LX7 622 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 MTA3Q9BTC8 594 aa9.7□□□□□ -0.86
SYNE1-209ENST00000367257 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.7□□□□□ -0.86
SYNE1-209ENST00000367257 WDR46O15213 610 aaKnown RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CAND2O75155 1236 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 TTLL7Q6ZT98 887 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 TRIM50Q86XT4 487 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 DEPTORQ8TB45 409 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 TCP11Q8WWU5 503 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 SERPINI1Q99574 410 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 KIFC3Q9BVG8 833 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 THAP9Q9H5L6 903 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 PLEKHG3A1L390 1219 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 ANKRD65E5RJM6 399 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CCDC188H7C350 402 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 KCNK3O14649 394 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 RPN1P04843 607 aaKnown RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 SKIP12755 728 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 SCG2P13521 617 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 ALDH1B1P30837 517 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CEBPAP49715 358 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 COPB1P53618 953 aaKnown RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 KRT81Q14533 505 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 SLC39A14Q15043 492 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 EP400NLQ6ZTU2 488 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 FLAD1Q8NFF5 587 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 LRGUKQ96M69 825 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 TRIM15Q9C019 465 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CCDC68Q9H2F9 335 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 AFG3L2Q9Y4W6 797 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 ADCY9O60503 1353 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 RFX7Q2KHR2 1363 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 FOXP2O15409 715 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 GAS7O60861 476 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 SLC39A6Q13433 755 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 GPATCH4Q5T3I0 446 aaKnown RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 BEND3Q5T5X7 828 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 RSPH3Q86UC2 560 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 GPHNQ9NQX3 736 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CCDC87Q9NVE4 849 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 CCPG1Q9ULG6 757 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 USP19O94966 1318 aa9.69□□□□□ -0.86
SYNE1-209ENST00000367257 ADAMTS2O95450 1211 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 RCAN1P53805 252 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 STX1BP61266 288 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 CHST3Q7LGC8 479 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 GPBP1Q86WP2 473 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 NRBF2Q96F24 287 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 TEKT3Q9BXF9 490 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 SPTLC3Q9NUV7 552 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 HESX1Q9UBX0 185 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 PACSIN2Q9UNF0 486 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-209ENST00000367257 NWD1Q149M9 1564 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 WDR17Q8IZU2 1322 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-209ENST00000367257 PGRMC1O00264 195 aaKnown RBP9.68□□□□□ -0.86
SYNE1-209ENST00000367257 SLFN14P0C7P3 912 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 KRT10P13645 584 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 CAV1Q03135 178 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 LAMB3Q13751 1172 aa9.68□□□□□ -0.86
SYNE1-209ENST00000367257 TFDP1Q14186 410 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms