RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RIMBP3BA6NNM3 1639 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 RIMBP3Q9UFD9 1639 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 SH2B2O14492 632 aaPredicted RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 BUB1BO60566 1050 aaPredicted RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 TBC1D8O95759 1140 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 KRT19P08727 400 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 DMP1Q13316 513 aaPredicted RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 XKR9Q5GH70 373 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 ARMCX5Q6P1M9 558 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 EXOC8Q8IYI6 725 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 GLG1Q92896 1179 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 NRBP2Q9NSY0 501 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 SETBP1Q9Y6X0 1596 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 ERCC3P19447 782 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 ARHGEF2Q92974 986 aaKnown RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 CSADQ9Y600 493 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 PIK3C2BO00750 1634 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 RCAN1P53805 252 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 PALM2Q8IXS6 379 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 FNBP4Q8N3X1 1017 aaPredicted RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 TTLL11Q8NHH1 800 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 FTOQ9C0B1 505 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 RWDD2AQ9UIY3 292 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 MYO3AQ8NEV4 1616 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 WDR19Q8NEZ3 1342 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 SLC12A2P55011 1212 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 MFAP3P55082 362 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF827Q17R98 1081 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 FAM102BQ5T8I3 360 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 PPP1R13BQ96KQ4 1090 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 RIOK1Q9BRS2 568 aaKnown RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 SRPRBQ9Y5M8 271 aaKnown RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 A0A087WWV3 80 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 TTLL1O95922 423 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 DYNLL1P63167 89 aaKnown RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 NECTIN1Q15223 517 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 CCDC38Q502W7 563 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 SH2D4BQ5SQS7 431 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 ATP6V0A1Q93050 837 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 KRT12Q99456 494 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 CAPS2Q9BXY5 557 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 DHX36Q9H2U1 1008 aaKnown RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 KANSL2Q9H9L4 492 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 SLC39A2Q9NP94 309 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF277Q9NRM2 450 aaPredicted RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 PTPRUQ92729 1446 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 PTK2Q05397 1052 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 CDC37Q16543 378 aaPredicted RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 ABCB5Q2M3G0 1257 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 HESX1Q9UBX0 185 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 CYP2D7A0A087X1C5 515 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 GNGT1P63211 74 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 PNMA8AQ86V59 439 aaPredicted RBP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 GPIHBP1Q8IV16 184 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 GPKOWQ92917 476 aaPredicted RBP eCLIP12.84□□□□□ -0.35
COL9A1-202ENST00000357250 THAP9Q9H5L6 903 aa12.84□□□□□ -0.35
COL9A1-202ENST00000357250 STAM2O75886 525 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 ABCB4P21439 1286 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CASP14P31944 242 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 PSMC2P35998 433 aaKnown RBP12.83□□□□□ -0.36
COL9A1-202ENST00000357250 ADCY8P40145 1251 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 NSFP46459 744 aaKnown RBP12.83□□□□□ -0.36
COL9A1-202ENST00000357250 EPHB4P54760 987 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 FAM160B1Q5W0V3 765 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 PHLDB3Q6NSJ2 640 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 KIAA0825Q8IV33 1275 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 MAP7D3Q8IWC1 876 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 SPZ1Q9BXG8 430 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 MLXIPQ9HAP2 919 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CDC42BPGQ6DT37 1551 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.83□□□□□ -0.36
COL9A1-202ENST00000357250 GOLGA8HP0CJ92 632 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 ALCAMQ13740 583 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CDHR1Q96JP9 859 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 NT5C1BQ96P26 610 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 JRKLQ9Y4A0 524 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 TESPA1A2RU30 521 aaPredicted RBP12.83□□□□□ -0.36
COL9A1-202ENST00000357250 H7C1W4 665 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 RNF8O76064 485 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CCNE1P24864 410 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 ZBED6P86452 979 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 RESTQ13127 1097 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 SEMA3FQ13275 785 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CASC4Q6P4E1 433 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 PPP4R3CPQ6ZMV5 832 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 ARMC9Q7Z3E5 817 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 RNF10Q8N5U6 811 aaKnown RBP12.83□□□□□ -0.36
COL9A1-202ENST00000357250 PPP4R1Q8TF05 950 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 PANX2Q96RD6 677 aa12.83□□□□□ -0.36
COL9A1-202ENST00000357250 CCDC151A5D8V7 595 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 CASQ2O14958 399 aaPredicted RBP12.82□□□□□ -0.36
COL9A1-202ENST00000357250 ALAS1P13196 640 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 SEPT6Q14141 434 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 LRRC47Q8N1G4 583 aaKnown RBP12.82□□□□□ -0.36
COL9A1-202ENST00000357250 RDH13Q8NBN7 331 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 CSRNP1Q96S65 589 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 TMEM206Q9H813 350 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 SPC25Q9HBM1 224 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 SH3GLB2Q9NR46 395 aa12.82□□□□□ -0.36
COL9A1-202ENST00000357250 TACC3Q9Y6A5 838 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms