RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PDIA5Q14554 519 aa24.33■■□□□ 1.48
SHMT1-202ENST00000352886 GPATCH4Q5T3I0 446 aaKnown RBP24.33■■□□□ 1.48
SHMT1-202ENST00000352886 NUDT12Q9BQG2 462 aa24.33■■□□□ 1.48
SHMT1-202ENST00000352886 NOC4LQ9BVI4 516 aaKnown RBP24.33■■□□□ 1.48
SHMT1-202ENST00000352886 SEMA6BQ9H3T3 888 aa24.33■■□□□ 1.48
SHMT1-202ENST00000352886 AGPAT5Q9NUQ2 364 aa24.33■■□□□ 1.48
SHMT1-202ENST00000352886 CLK2P49760 499 aaKnown RBP24.32■■□□□ 1.48
SHMT1-202ENST00000352886 MIIPQ5JXC2 388 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 KRT79Q5XKE5 535 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 UNC13DQ70J99 1090 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 CUL5Q93034 780 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 NAPGQ99747 312 aaPredicted RBP24.32■■□□□ 1.48
SHMT1-202ENST00000352886 PARD6BQ9BYG5 372 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 TTYH3Q9C0H2 523 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 USP17L10C9JJH3 530 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 PPP4R3AQ6IN85 833 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 CEP112Q8N8E3 955 aa24.32■■□□□ 1.48
SHMT1-202ENST00000352886 ZBTB5O15062 677 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 ALDH1B1P30837 517 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 TUBB2AQ13885 445 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 TUBB2BQ9BVA1 445 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 NUP58Q9BVL2 599 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 NRXN2Q9P2S2 1712 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 PVALEFA0A1B0GWK0 134 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 RASSF10A6NK89 507 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 NKRFO15226 690 aaKnown RBP eCLIP24.31■■□□□ 1.48
SHMT1-202ENST00000352886 HSPA1LP34931 641 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 CENPPQ6IPU0 288 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 ZFPM1Q8IX07 1006 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 NLGN1Q8N2Q7 840 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 RAD54LQ92698 747 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 PCMTD1Q96MG8 357 aaPredicted RBP24.31■■□□□ 1.48
SHMT1-202ENST00000352886 ST7Q9NRC1 585 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 TRIM10Q9UDY6 481 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 DDX25Q9UHL0 483 aaKnown RBP24.31■■□□□ 1.48
SHMT1-202ENST00000352886 GUCA1BQ9UMX6 200 aa24.31■■□□□ 1.48
SHMT1-202ENST00000352886 COL11A2P13942 1736 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-202ENST00000352886 MRPL12P52815 198 aaKnown RBP24.3■■□□□ 1.48
SHMT1-202ENST00000352886 CC2D1AQ6P1N0 951 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-202ENST00000352886 RETREG2Q8NC44 543 aa24.3■■□□□ 1.48
SHMT1-202ENST00000352886 CRKP46108 304 aa24.3■■□□□ 1.48
SHMT1-202ENST00000352886 MEA1Q16626 185 aa24.3■■□□□ 1.48
SHMT1-202ENST00000352886 KCNK18Q7Z418 384 aa24.3■■□□□ 1.48
SHMT1-202ENST00000352886 ZSCAN29Q8IWY8 852 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-202ENST00000352886 ZHX1Q9UKY1 873 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-202ENST00000352886 ARFGEF1Q9Y6D6 1849 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 IDEP14735 1019 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 TMX4Q9H1E5 349 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-202ENST00000352886 PSTPIP2Q9H939 334 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 DBNDD1Q9H9R9 158 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 RAD21O60216 631 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 TFRCP02786 760 aaKnown RBP24.29■■□□□ 1.48
SHMT1-202ENST00000352886 COL23A1Q86Y22 540 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-202ENST00000352886 HAS1Q92839 578 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 GJA10Q969M2 543 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 DNAJC18Q9H819 358 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 KCNQ5Q9NR82 932 aa24.29■■□□□ 1.48
SHMT1-202ENST00000352886 A0A0U1RQG5 324 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-202ENST00000352886 CACNB3P54284 484 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 HERVK_113P62684 666 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 TMEM119Q4V9L6 283 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 DDX12PQ92771 950 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 MTMR8Q96EF0 704 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 EHD4Q9H223 541 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 HAUS4Q9H6D7 363 aa24.28■■□□□ 1.48
SHMT1-202ENST00000352886 FAM196BA6NMK8 535 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 PLA2G4AP47712 749 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 ZBED6P86452 979 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 FKBP15Q5T1M5 1219 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 ERGIC2Q96RQ1 377 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 ZNHIT6Q9NWK9 470 aaKnown RBP24.27■■□□□ 1.48
SHMT1-202ENST00000352886 SIPA1L1O43166 1804 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 MARCH6O60337 910 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 PDE6BP35913 854 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 TCP10Q12799 353 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 ECM1Q16610 540 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 CCDC17Q96LX7 622 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 TFR2Q9UP52 801 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 PCDHAC2Q9Y5I4 1007 aa24.27■■□□□ 1.48
SHMT1-202ENST00000352886 GUF1Q8N442 669 aaKnown RBP24.26■■□□□ 1.47
SHMT1-202ENST00000352886 ARFGAP3Q9NP61 516 aa24.26■■□□□ 1.47
SHMT1-202ENST00000352886 SHROOM1Q2M3G4 852 aaPredicted RBP24.26■■□□□ 1.47
SHMT1-202ENST00000352886 KIAA0825Q8IV33 1275 aa24.26■■□□□ 1.47
SHMT1-202ENST00000352886 MASTLQ96GX5 879 aa24.26■■□□□ 1.47
SHMT1-202ENST00000352886 ZDHHC15Q96MV8 337 aa24.26■■□□□ 1.47
SHMT1-202ENST00000352886 TBC1D8O95759 1140 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 KRT83P78385 493 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 CCDC122Q5T0U0 273 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 LRRC27Q9C0I9 530 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 NHEJ1Q9H9Q4 299 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-202ENST00000352886 PCDHA12Q9UN75 941 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 ATP8B1O43520 1251 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 GCFC2P16383 781 aaKnown RBP24.25■■□□□ 1.47
SHMT1-202ENST00000352886 CYLC1P35663 651 aaPredicted RBP24.25■■□□□ 1.47
SHMT1-202ENST00000352886 WHAMMP3Q1A5X7 153 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 FIGNQ5HY92 759 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 PODNQ7Z5L7 613 aa24.25■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L15C9J2P7 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L13C9JLJ4 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L11C9JVI0 530 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms