RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SAMM50Q9Y512 469 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 RANBP2P49792 3224 aaKnown RBP10.47□□□□□ -0.73
USP4-202ENST00000351842 CNGA1P29973 690 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 PSMC4P43686 418 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 NEK8Q86SG6 692 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 SH2D3AQ9BRG2 576 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 BMP2KQ9NSY1 1161 aaPredicted RBP10.47□□□□□ -0.73
USP4-202ENST00000351842 CIZ1Q9ULV3 898 aaPredicted RBP10.47□□□□□ -0.73
USP4-202ENST00000351842 TRPM7Q96QT4 1865 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 LAMA3Q16787 3333 aa10.47□□□□□ -0.73
USP4-202ENST00000351842 GREB1LQ9C091 1923 aaPredicted RBP10.47□□□□□ -0.73
USP4-202ENST00000351842 CNMDO75829 334 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 TECP42680 631 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 STAMQ92783 540 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 BCAS3Q9H6U6 928 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 RABGAP1Q9Y3P9 1069 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 A0A1B0GVL5 298 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 CCNA1P78396 465 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 CAMK4Q16566 473 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 ANKRD23Q86SG2 305 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 FBXO16Q8IX29 292 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 LENG1Q96BZ8 264 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 MTMR8Q96EF0 704 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 ZNF396Q96N95 335 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 FOXP1Q9H334 677 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 ZSCAN16Q9H4T2 348 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 CYP39A1Q9NYL5 469 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 TCEAL9Q9UHQ7 104 aa10.46□□□□□ -0.73
USP4-202ENST00000351842 ZHX1Q9UKY1 873 aaPredicted RBP10.46□□□□□ -0.73
USP4-202ENST00000351842 TLR2O60603 784 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 CYP2C19P33261 490 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 CYP4A11Q02928 519 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 CCL14Q16627 93 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 TMEM63BQ5T3F8 832 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 USP49Q70CQ1 688 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 REPS2Q8NFH8 660 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 CD99L2Q8TCZ2 262 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 LEO1Q8WVC0 666 aaPredicted RBP10.46□□□□□ -0.74
USP4-202ENST00000351842 WDR11Q9BZH6 1224 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 POLD4Q9HCU8 107 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 DDX25Q9UHL0 483 aaKnown RBP10.46□□□□□ -0.74
USP4-202ENST00000351842 PTPRFP10586 1907 aa10.46□□□□□ -0.74
USP4-202ENST00000351842 POTEMA6NI47 508 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 FAM86B1E9PN63 330 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 FAM86B2P0C5J1 330 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 ELNP15502 786 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 HSPA6P17066 643 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 KRT25Q7Z3Z0 450 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 GPR142Q7Z601 462 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 RASSF10A6NK89 507 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 SPTLC2O15270 562 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 NEMFO60524 1076 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 SSBP05455 408 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP4-202ENST00000351842 BRAPQ7Z569 592 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 MCF2L2Q86YR7 1114 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 RNF186Q9NXI6 227 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 COL11A1P12107 1806 aaPredicted RBP10.45□□□□□ -0.74
USP4-202ENST00000351842 U2AF2P26368 475 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP4-202ENST00000351842 MCM4P33991 863 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 RILPL1Q5EBL4 403 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 PLA2G4DQ86XP0 818 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 CFAP45Q9UL16 551 aa10.45□□□□□ -0.74
USP4-202ENST00000351842 NID2Q14112 1375 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 MCM3APO60318 1980 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 PHIPQ8WWQ0 1821 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 NR3C2P08235 984 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 ARP10275 920 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 SMARCA1P28370 1054 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 CAP1Q01518 475 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 PDE4DQ08499 809 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 CALCRLQ16602 461 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 MB21D1Q8N884 522 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 SH3GLB2Q9NR46 395 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 SYNPO2Q9UMS6 1093 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 A0A0U1RQG5 324 aaPredicted RBP10.44□□□□□ -0.74
USP4-202ENST00000351842 COBLO75128 1261 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 RAD51AP2Q09MP3 1159 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 ISM2Q6H9L7 571 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 NCAPH2Q6IBW4 605 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 RIOX2Q8IUF8 465 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 EPSTI1Q96J88 318 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 PDGFCQ9NRA1 345 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 GABRQQ9UN88 632 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 TELO2Q9Y4R8 837 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 CASP8AP2Q9UKL3 1982 aa10.44□□□□□ -0.74
USP4-202ENST00000351842 CA12O43570 354 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 CTGFP29279 349 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 GCLCP48506 637 aaPredicted RBP10.43□□□□□ -0.74
USP4-202ENST00000351842 IRX5P78411 483 aaPredicted RBP10.43□□□□□ -0.74
USP4-202ENST00000351842 CAVIN1Q6NZI2 390 aaKnown RBP10.43□□□□□ -0.74
USP4-202ENST00000351842 FAM110CQ1W6H9 321 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 PLEKHH3Q7Z736 793 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 FSIP1Q8NA03 581 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 COPS5Q92905 334 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 TTC12Q9H892 705 aaPredicted RBP10.43□□□□□ -0.74
USP4-202ENST00000351842 PXMP2Q9NR77 195 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 PCDHA7Q9UN72 937 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 MEIS1O00470 390 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 FLT3LGP49771 235 aa10.43□□□□□ -0.74
USP4-202ENST00000351842 SP3Q02447 781 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms