RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 DDX25Q9UHL0 483 aaKnown RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 SUGT1Q9Y2Z0 365 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 A0A1W2PQC6 194 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 MMP10P09238 476 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 CRKP46108 304 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 FXR2P51116 673 aaKnown RBP eCLIP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 KRT79Q5XKE5 535 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 ZSCAN29Q8IWY8 852 aaPredicted RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 CUL5Q93034 780 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 RIC8AQ9NPQ8 531 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 CAPN11Q9UMQ6 739 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 LTBP1Q14766 1721 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 SSBP05455 408 aaKnown RBP eCLIP16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 WDR59Q6PJI9 974 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 GPR161Q8N6U8 529 aaKnown RBP16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 PARD6BQ9BYG5 372 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 CDC23Q9UJX2 597 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L15C9J2P7 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L13C9JLJ4 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L11C9JVI0 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L18D6R9N7 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L22D6RA61 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L17D6RBQ6 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L19D6RCP7 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L20D6RJB6 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L24Q0WX57 530 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 LRRC41Q15345 812 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 USP17L6PQ6QN14 398 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 GLIS3Q8NEA6 775 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 DNAJC7Q99615 494 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 RAB34Q9BZG1 259 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 DNAJC18Q9H819 358 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 PSTPIP2Q9H939 334 aa16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 ZHX1Q9UKY1 873 aaPredicted RBP16.62■□□□□ 0.25
VIPAS39-202ENST00000343765 ZBTB5O15062 677 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 ECM1Q16610 540 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 SRGAP1Q7Z6B7 1085 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 NAPGQ99747 312 aaPredicted RBP16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 FOCADQ5VW36 1801 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 LRRC37AA6NMS7 1700 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 RASSF10A6NK89 507 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 SNAP25P60880 206 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 ORC2Q13416 577 aaPredicted RBP16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 MIIPQ5JXC2 388 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 FAM114A1Q8IWE2 563 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 RAD54LQ92698 747 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 DDX12PQ92771 950 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 FAM53CQ9NYF3 392 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 STK17AQ9UEE5 414 aa16.61■□□□□ 0.25
VIPAS39-202ENST00000343765 ZRANB2O95218 330 aaKnown RBP eCLIP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 GPATCH4Q5T3I0 446 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 UNC13DQ70J99 1090 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 NLGN1Q8N2Q7 840 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 RABGGTAQ92696 567 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 ANKRD31Q8N7Z5 1873 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 ALDH1B1P30837 517 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 MRPL12P52815 198 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 HERVK_113P62684 666 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 HAS1Q92839 578 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 ZBTB9Q96C00 473 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 DDTLA6NHG4 134 aaPredicted RBP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 ENC1O14682 589 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 EEF2P13639 858 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 SLC1A4P43007 532 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 SEMA3FQ13275 785 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 HHIPL2Q6UWX4 724 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 KIAA1328Q86T90 577 aa16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 GTPBP4Q9BZE4 634 aaKnown RBP16.6■□□□□ 0.25
VIPAS39-202ENST00000343765 QRICH1Q2TAL8 776 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 FKBP15Q5T1M5 1219 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 PPP1R18Q6NYC8 613 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 CC2D1AQ6P1N0 951 aaPredicted RBP16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 TTYH3Q9C0H2 523 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 ZNHIT6Q9NWK9 470 aaKnown RBP16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 TBC1D7Q9P0N9 293 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 GDF11O95390 407 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 PDE6BP35913 854 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 CLK2P49760 499 aaKnown RBP16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 CCDC122Q5T0U0 273 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 CEP112Q8N8E3 955 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 TRIM34Q9BYJ4 488 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 FAM207AQ9NSI2 230 aaPredicted RBP16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 PCDHA1Q9Y5I3 950 aa16.59■□□□□ 0.25
VIPAS39-202ENST00000343765 TAL1P17542 331 aaPredicted RBP16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 PLA2G4AP47712 749 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 CACNB1Q02641 598 aaPredicted RBP16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 RAD51AP2Q09MP3 1159 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 PDIA5Q14554 519 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 CERKLQ49MI3 558 aaPredicted RBP16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 NCAPH2Q6IBW4 605 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 PPP4R3AQ6IN85 833 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 CENPPQ6IPU0 288 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 ZNF771Q7L3S4 317 aaPredicted RBP16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 MASTLQ96GX5 879 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 NHEJ1Q9H9Q4 299 aaPredicted RBP16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 HDAC6Q9UBN7 1215 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 PRDM4Q9UKN5 801 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 PCDHA12Q9UN75 941 aa16.58■□□□□ 0.25
VIPAS39-202ENST00000343765 SASH3O75995 380 aa16.58■□□□□ 0.24
VIPAS39-202ENST00000343765 RHOXF2BP0C7M4 288 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms