RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ADM5C9JUS6 153 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 GCOM1H8Y6P7 765 aaPredicted RBP15.09■□□□□ 0.01
HMGB1-202ENST00000339872 ICAM1P05362 532 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 POLR2MP0CAP2 368 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 CYP3A7P24462 503 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 MYL5Q02045 173 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 MOXD1Q6UVY6 613 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 SULF1Q8IWU6 871 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 SPC24Q8NBT2 197 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 UIMC1Q96RL1 719 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 RBBP6Q7Z6E9 1792 aaKnown RBP15.08■□□□□ 0.01
HMGB1-202ENST00000339872 ZNF536O15090 1300 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 OTOFQ9HC10 1997 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 PDIA5Q14554 519 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 DPY19L2Q6NUT2 758 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 ILDR2Q71H61 639 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 LRRC15Q8TF66 581 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 MBOAT7Q96N66 472 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 CUEDC2Q9H467 287 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 PCDHA12Q9UN75 941 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 HMGCS2P54868 508 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 PRR16Q569H4 304 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 TEX2Q8IWB9 1127 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 CPXCR1Q8N123 301 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 CDK5RAP3Q96JB5 506 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 KCNMB3Q9NPA1 279 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 PPP1R9AQ9ULJ8 1098 aa15.08■□□□□ 0
HMGB1-202ENST00000339872 WDR90Q96KV7 1748 aa15.07■□□□□ 0
HMGB1-202ENST00000339872 NOL9Q5SY16 702 aaKnown RBP15.07■□□□□ 0
HMGB1-202ENST00000339872 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.07■□□□□ 0
HMGB1-202ENST00000339872 SNX29Q8TEQ0 813 aa15.07■□□□□ 0
HMGB1-202ENST00000339872 MAGEF1Q9HAY2 307 aa15.07■□□□□ 0
HMGB1-202ENST00000339872 KBTBD4Q9NVX7 518 aa15.07■□□□□ 0
HMGB1-202ENST00000339872 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.07■□□□□ 0
HMGB1-202ENST00000339872 CTDP1Q9Y5B0 961 aaPredicted RBP15.07■□□□□ 0
HMGB1-202ENST00000339872 PAPPA2Q9BXP8 1791 aa15.07■□□□□ 0
HMGB1-202ENST00000339872 COL11A1P12107 1806 aaPredicted RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 ESPNB1AK53 854 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 FAM86B1E9PN63 330 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 USP2O75604 605 aaPredicted RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 FAM86B2P0C5J1 330 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 GPR162Q16538 588 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 KRT79Q5XKE5 535 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 DRC7Q8IY82 874 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 SLC38A10Q9HBR0 1119 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 RAVER2Q9HCJ3 691 aaKnown RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 RPN1P04843 607 aaKnown RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 ZNF76P36508 570 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 FMR1Q06787 632 aaKnown RBP eCLIP15.06■□□□□ 0
HMGB1-202ENST00000339872 GRB10Q13322 594 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 Q4G0T1 1027 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 SLFN12Q8IYM2 578 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 SMYD4Q8IYR2 804 aaPredicted RBP15.06■□□□□ 0
HMGB1-202ENST00000339872 LENG9Q96B70 501 aa15.06■□□□□ 0
HMGB1-202ENST00000339872 ALAS1P13196 640 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 KRT26Q7Z3Y9 468 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 ZSCAN30Q86W11 494 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 TRMT44Q8IYL2 757 aaKnown RBP15.05■□□□□ 0
HMGB1-202ENST00000339872 ETNPPLQ8TBG4 499 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 PNMA5Q96PV4 448 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 NUDT12Q9BQG2 462 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 HSD3B7Q9H2F3 369 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 EHMT1Q9H9B1 1298 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 HOMER2Q9NSB8 354 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 RMND1Q9NWS8 449 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 RLFQ13129 1914 aa15.05■□□□□ 0
HMGB1-202ENST00000339872 GOLGA6L6A8MZA4 724 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 C19orf81C9J6K1 198 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 NFIBO00712 420 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 MYL1P05976 194 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 CYP3A4P08684 503 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 CIITAP33076 1130 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 UBXN2AP68543 259 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 VGLL4Q14135 290 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 KLHL10Q6JEL2 608 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 MRFAP1L1Q96HT8 127 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 L3MBTL3Q96JM7 780 aaPredicted RBP15.05■□□□□ -0
HMGB1-202ENST00000339872 C12orf42Q96LP6 360 aa15.05■□□□□ -0
HMGB1-202ENST00000339872 ZBED4O75132 1171 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 CD44P16070 742 aaKnown RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 DHX8Q14562 1220 aaKnown RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 ATG4CQ96DT6 458 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 STK17AQ9UEE5 414 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 SNCAIPQ9Y6H5 919 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 PTPRFP10586 1907 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 TBX3O15119 743 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 PPP1R12BO60237 982 aaPredicted RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 ATP1A3P13637 1013 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 ERCC5P28715 1186 aaPredicted RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 CDC25BP30305 580 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 EPHX2P34913 555 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 USP50Q70EL3 339 aaPredicted RBP15.04■□□□□ -0
HMGB1-202ENST00000339872 FAM43AQ8N2R8 423 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 CYP2W1Q8TAV3 490 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 CLEC4DQ8WXI8 215 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 WNK4Q96J92 1243 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 BLOC1S4Q9NUP1 217 aa15.04■□□□□ -0
HMGB1-202ENST00000339872 FANCLQ9NW38 375 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms