RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MANSC4A6NHS7 340 aaPredicted RBP11.25□□□□□ -0.61
USP54-201ENST00000339859 SPDYE2Q495Y8 402 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 CHST13Q8NET6 341 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 PPP6R2O75170 966 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 NLRP12P59046 1061 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 CYP4A11Q02928 519 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 ORC2Q13416 577 aaPredicted RBP11.25□□□□□ -0.61
USP54-201ENST00000339859 TRIM14Q14142 442 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 SLC4A9Q96Q91 983 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 KRT76Q01546 638 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 NELFBQ8WX92 580 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 PRMT6Q96LA8 375 aaPredicted RBP11.25□□□□□ -0.61
USP54-201ENST00000339859 NUDT12Q9BQG2 462 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 FTOQ9C0B1 505 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP54-201ENST00000339859 KMT5AQ9NQR1 393 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 SERTAD1Q9UHV2 236 aa11.25□□□□□ -0.61
USP54-201ENST00000339859 HOXA7P31268 230 aaPredicted RBP11.24□□□□□ -0.61
USP54-201ENST00000339859 SFNP31947 248 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 LIN9Q5TKA1 542 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 FAM83AQ86UY5 434 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 LDHDQ86WU2 507 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 NACA2Q9H009 215 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 ERLIN1O75477 346 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 Q3C1V9 767 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 MTERF2Q49AM1 385 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 BLZF1Q9H2G9 400 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 ADCY5O95622 1261 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 BCRP11274 1271 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 FGFR2P21802 821 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 GCLCP48506 637 aaPredicted RBP11.24□□□□□ -0.61
USP54-201ENST00000339859 HSP90AA4PQ58FG1 418 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 INO80BQ9C086 356 aaPredicted RBP11.24□□□□□ -0.61
USP54-201ENST00000339859 GTPBP6O43824 516 aaPredicted RBP11.24□□□□□ -0.61
USP54-201ENST00000339859 LMAN1P49257 510 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 QRICH1Q2TAL8 776 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 KATNAL1Q9BW62 490 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 FAM205AQ6ZU69 1335 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 KRT83P78385 493 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 C3orf67Q6ZVT6 689 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 SYMPKQ92797 1274 aaKnown RBP11.24□□□□□ -0.61
USP54-201ENST00000339859 RNF34Q969K3 372 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 ACCSQ96QU6 501 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 MED10Q9BTT4 135 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 STK17AQ9UEE5 414 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 PARP2Q9UGN5 583 aa11.24□□□□□ -0.61
USP54-201ENST00000339859 PRELPP51888 382 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ARMCX5Q6P1M9 558 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 OR6J1Q8NGC5 347 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 CAP2P40123 477 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 RGS2P41220 211 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ARID5AQ03989 594 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 RNASELQ05823 741 aaKnown RBP11.23□□□□□ -0.61
USP54-201ENST00000339859 PTF1AQ7RTS3 328 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 METTL23Q86XA0 190 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 NEK9Q8TD19 979 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ZNF302Q9NR11 478 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ANKFY1Q9P2R3 1169 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 EP400NLQ6ZTU2 488 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 LARP4BQ92615 738 aaKnown RBP11.23□□□□□ -0.61
USP54-201ENST00000339859 EHD4Q9H223 541 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 RIC8AQ9NPQ8 531 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 PHRF1Q9P1Y6 1649 aaKnown RBP11.23□□□□□ -0.61
USP54-201ENST00000339859 WDR64B1ANS9 1081 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ALCAMQ13740 583 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 SPATA33Q96N06 139 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 NUP58Q9BVL2 599 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 INO80B-WBP1J3KQ70 363 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 TMEM191BP0C7N4 346 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 CMA1P23946 247 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 LUZP1Q86V48 1076 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 RGS22Q8NE09 1264 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ANKRD36BP1Q96IX9 119 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 ZBED2Q9BTP6 218 aa11.23□□□□□ -0.61
USP54-201ENST00000339859 NAA15Q9BXJ9 866 aaKnown RBP11.23□□□□□ -0.61
USP54-201ENST00000339859 BCL9LQ86UU0 1499 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 NEFHP12036 1026 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 TNFAIP3P21580 790 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 MARK3P27448 753 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 CYP2J2P51589 502 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 TEX35Q5T0J7 233 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 C15orf52Q6ZUT6 534 aaKnown RBP11.22□□□□□ -0.61
USP54-201ENST00000339859 HOOK3Q86VS8 718 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 ZSWIM4Q9H7M6 989 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 PFKFB1P16118 471 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 PRPF4BQ13523 1007 aaKnown RBP11.22□□□□□ -0.61
USP54-201ENST00000339859 ASIC2Q16515 512 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 CACTINQ8WUQ7 758 aaKnown RBP11.22□□□□□ -0.61
USP54-201ENST00000339859 TMEM206Q9H813 350 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 PTPN14Q15678 1187 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 BARHL2Q9NY43 387 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 NDUFB10O96000 172 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 ZNF543Q08ER8 600 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 SESTD1Q86VW0 696 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 OPTNQ96CV9 577 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 IQCDQ96DY2 449 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 APOL6Q9BWW8 343 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 ATP6V0A4Q9HBG4 840 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 GOLGA6L10A0A0M3HER8 536 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 VIL1P09327 827 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms