RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 NUP133Q8WUM0 1156 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 LZTS2Q9BRK4 669 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 ELP1O95163 1332 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 CNGA1P29973 690 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 CDC27P30260 824 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 AKAP17AQ02040 695 aaKnown RBP18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 BAATQ14032 418 aaPredicted RBP18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 NSMFQ6X4W1 530 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 CMTR1Q8N1G2 835 aaKnown RBP18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 MTMR8Q96EF0 704 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 SLC5A4Q9NY91 659 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 PLXNA1Q9UIW2 1896 aa18.87■□□□□ 0.61
PDLIM1-201ENST00000329399 PRPF40AO75400 957 aaKnown RBP18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 ZNF865P0CJ78 1059 aaPredicted RBP18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 FOXD4L5Q5VV16 416 aaPredicted RBP18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 CCDC144CPQ8IYA2 1237 aa18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 FOXD4L4Q8WXT5 416 aaPredicted RBP18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 ZNF396Q96N95 335 aaPredicted RBP18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 OGDHLQ9ULD0 1010 aa18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 MCM3APO60318 1980 aa18.86■□□□□ 0.61
PDLIM1-201ENST00000329399 POTEB2H3BUK9 544 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 PRPF3O43395 683 aaKnown RBP18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 PLEKHA8P1O95397 391 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 SMARCA1P28370 1054 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 RESTQ13127 1097 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 MAMDC4Q6UXC1 1216 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 SLC30A10Q6XR72 485 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 PIBF1Q8WXW3 757 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 LENG1Q96BZ8 264 aaPredicted RBP18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 PIGSQ96S52 555 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 ALG1Q9BT22 464 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 RIOX1Q9H6W3 641 aa18.85■□□□□ 0.61
PDLIM1-201ENST00000329399 OPLAHO14841 1288 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 SRBD1Q8N5C6 995 aaKnown RBP18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 PAWRQ96IZ0 340 aaKnown RBP18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 KATNBL1Q9H079 304 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 DDX20Q9UHI6 824 aaKnown RBP18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 LCTP09848 1927 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 ADCY6O43306 1168 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 PTGS1P23219 599 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 UBE2HP62256 183 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 SAFBQ15424 915 aaKnown RBP eCLIP18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 SYAP1Q96A49 352 aaPredicted RBP18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 SLC26A6Q9BXS9 759 aa18.84■□□□□ 0.61
PDLIM1-201ENST00000329399 FARP2O94887 1054 aaPredicted RBP18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 RPS6P62753 249 aaKnown RBP18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 IRX5P78411 483 aaPredicted RBP18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 GSE1Q14687 1217 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 TMEM63BQ5T3F8 832 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 TMTC3Q6ZXV5 915 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 ARMCX2Q7L311 632 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 ZNF467Q7Z7K2 595 aaPredicted RBP18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 FBXO11Q86XK2 927 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 HOMER1Q86YM7 354 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 COL20A1Q9P218 1284 aa18.83■□□□□ 0.6
PDLIM1-201ENST00000329399 hCG_1642624A0A1W2PR95 340 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 ZBTB5O15062 677 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 SEPT4O43236 478 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 CALML3P27482 149 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 DNM1Q05193 864 aaKnown RBP18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 PFASO15067 1338 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 SYNGAP1Q96PV0 1343 aa18.82■□□□□ 0.6
PDLIM1-201ENST00000329399 RNF207Q6ZRF8 634 aa18.81■□□□□ 0.6
PDLIM1-201ENST00000329399 CCDC82Q8N4S0 544 aa18.81■□□□□ 0.6
PDLIM1-201ENST00000329399 PDGFCQ9NRA1 345 aa18.81■□□□□ 0.6
PDLIM1-201ENST00000329399 PCDH10Q9P2E7 1040 aa18.81■□□□□ 0.6
PDLIM1-201ENST00000329399 TCHHQ07283 1943 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 FUT2Q10981 343 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 ACVR2BQ13705 512 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 GJC2Q5T442 439 aaPredicted RBP18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 EEPD1Q7L9B9 569 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 MSL3Q8N5Y2 521 aaKnown RBP18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 PHKBQ93100 1093 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 CNPY2Q9Y2B0 182 aa18.8■□□□□ 0.6
PDLIM1-201ENST00000329399 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 KRT40Q6A162 431 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 FERMT3Q86UX7 667 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 SYTL5Q8TDW5 730 aaPredicted RBP18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 TAAR1Q96RJ0 339 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 AMNQ9BXJ7 453 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 FOXP1Q9H334 677 aaPredicted RBP18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 ZHX1Q9UKY1 873 aaPredicted RBP18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 PCDHA1Q9Y5I3 950 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 ABCB11O95342 1321 aa18.79■□□□□ 0.6
PDLIM1-201ENST00000329399 MYH6P13533 1939 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 PNMA6FA0A0J9YX94 578 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 PGK1P00558 417 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 COL6A1P12109 1028 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 U2AF2P26368 475 aaKnown RBP eCLIP18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 ALDH5A1P51649 535 aaPredicted RBP18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 CCDC144BQ3MJ40 725 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 MORC4Q8TE76 937 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 SPATA32Q96LK8 384 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 SPZ1Q9BXG8 430 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 SH3GLB2Q9NR46 395 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 NRBP1Q9UHY1 535 aa18.78■□□□□ 0.6
PDLIM1-201ENST00000329399 GNL2Q13823 731 aaKnown RBP18.77■□□□□ 0.6
PDLIM1-201ENST00000329399 TAPT1Q6NXT6 567 aa18.77■□□□□ 0.6
PDLIM1-201ENST00000329399 FBXO16Q8IX29 292 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms