RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 EXOC3L4Q17RC7 722 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 ALS2CLQ60I27 953 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 DPP8Q6V1X1 898 aaPredicted RBP16.21■□□□□ 0.19
TCOF1-201ENST00000323668 LEMD3Q9Y2U8 911 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 PRDX5P30044 214 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 C1orf167Q5SNV9 1468 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 SALL1Q9NSC2 1324 aa16.21■□□□□ 0.19
TCOF1-201ENST00000323668 CLUL1Q15846 466 aa16.21■□□□□ 0.18
TCOF1-201ENST00000323668 PPP2R5EQ16537 467 aa16.21■□□□□ 0.18
TCOF1-201ENST00000323668 TNS3Q68CZ2 1445 aa16.21■□□□□ 0.18
TCOF1-201ENST00000323668 ARHGEF35A5YM69 484 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 DESP17661 470 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 ABCB4P21439 1286 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 PSMD2Q13200 908 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 USH1GQ495M9 461 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 PRR16Q569H4 304 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 SRBD1Q8N5C6 995 aaKnown RBP16.2■□□□□ 0.18
TCOF1-201ENST00000323668 FHOD1Q9Y613 1164 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 NR2F2P24468 414 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 PLA2G4AP47712 749 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 SEMA3FQ13275 785 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 DIXDC1Q155Q3 683 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 ASPRV1Q53RT3 343 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 GSTA5Q7RTV2 222 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 STIM2Q9P246 746 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 CAPN11Q9UMQ6 739 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 MINPP1Q9UNW1 487 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 PP2D1A8MPX8 630 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 UBE2Q2LH0YL09 131 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 FTCDO95954 541 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 BCRP11274 1271 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 FAM98CQ17RN3 349 aaKnown RBP16.2■□□□□ 0.18
TCOF1-201ENST00000323668 CCDC50Q8IVM0 306 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 SLFN12Q8IYM2 578 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 EIF3CLB5ME19 914 aaKnown RBP16.2■□□□□ 0.18
TCOF1-201ENST00000323668 EEF2P13639 858 aaKnown RBP16.2■□□□□ 0.18
TCOF1-201ENST00000323668 ARHGAP44Q17R89 818 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 CLEC4GQ6UXB4 293 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 EIF3CQ99613 913 aaKnown RBP16.2■□□□□ 0.18
TCOF1-201ENST00000323668 USP40Q9NVE5 1235 aa16.2■□□□□ 0.18
TCOF1-201ENST00000323668 GYPCP04921 128 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 COA7Q96BR5 231 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ZBTB21Q9ULJ3 1066 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ORC4O43929 436 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 HOXA7P31268 230 aaPredicted RBP16.19■□□□□ 0.18
TCOF1-201ENST00000323668 KCNB1Q14721 858 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.19■□□□□ 0.182e-6■■■■■ 129.4
TCOF1-201ENST00000323668 PXDNQ92626 1479 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 hCG_1984214I3L0E3 225 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ATP2B4P23634 1241 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 GJC1P36383 396 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ZNF713Q8N859 430 aaPredicted RBP16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ATP2A1O14983 1001 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 ATP1A1P05023 1023 aaKnown RBP16.19■□□□□ 0.18
TCOF1-201ENST00000323668 SERPING1P05155 500 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 GCFC2P16383 781 aaKnown RBP16.19■□□□□ 0.18
TCOF1-201ENST00000323668 MRPS25P82663 173 aaKnown RBP16.19■□□□□ 0.18
TCOF1-201ENST00000323668 TXNRD1Q16881 649 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 DENND2CQ68D51 928 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 UNC13DQ70J99 1090 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 DPH5Q9H2P9 285 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 PCDHA1Q9Y5I3 950 aa16.19■□□□□ 0.18
TCOF1-201ENST00000323668 NNTQ13423 1086 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 PLCB1Q9NQ66 1216 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 TBC1D8O95759 1140 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 ATP5DP30049 168 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 GGCXP38435 758 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 NTRK3Q16288 839 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 GPATCH4Q5T3I0 446 aaKnown RBP16.18■□□□□ 0.18
TCOF1-201ENST00000323668 TPH2Q8IWU9 490 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 CCDC105Q8IYK2 499 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 CACNA2D3Q8IZS8 1091 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 COG1Q8WTW3 980 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 NKIRAS1Q9NYS0 192 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 ADAMTS1Q9UHI8 967 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 MCTP2Q6DN12 878 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 ADSSL1Q8N142 457 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 TMEM47Q9BQJ4 181 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 XDHP47989 1333 aa16.18■□□□□ 0.18
TCOF1-201ENST00000323668 ANKRD65E5RJM6 399 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 TOB1P50616 345 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-201ENST00000323668 PLCB3Q01970 1234 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 SEPT2Q15019 361 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 RDH13Q8NBN7 331 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 PRDM4Q9UKN5 801 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 TCP10Q12799 353 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 FAM133AQ8N9E0 248 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 PKD2L1Q9P0L9 805 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.17■□□□□ 0.18
TCOF1-201ENST00000323668 TAOK1Q7L7X3 1001 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 OGFOD1Q8N543 542 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 KIFAP3Q92845 792 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 IKBKGQ9Y6K9 419 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 PVALEFA0A1B0GWK0 134 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 RGS16O15492 202 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-201ENST00000323668 CFBP00751 764 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 MAGEA9P43362 315 aa16.17■□□□□ 0.18
TCOF1-201ENST00000323668 TMED8Q6PL24 325 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-201ENST00000323668 FOXP4Q8IVH2 680 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-201ENST00000323668 CCSER1Q9C0I3 900 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms