RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PHBP35232 272 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 SCNN1DP51172 638 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 PTGDRQ13258 359 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 FAM133BQ5BKY9 247 aaKnown RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 KIAA0825Q8IV33 1275 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 LRRC47Q8N1G4 583 aaKnown RBP12.57□□□□□ -0.4
VPS39-201ENST00000318006 MYCT1Q8N699 235 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 PANX2Q96RD6 677 aa12.57□□□□□ -0.4
VPS39-201ENST00000318006 ADCY8P40145 1251 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 C2orf54Q08AI8 447 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 GEN1Q17RS7 908 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 RETREG2Q8NC44 543 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 WHAMMQ8TF30 809 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 ATP2A3Q93084 1043 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 NCAPGQ9BPX3 1015 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 SLC24A3Q9HC58 644 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 TULP4Q9NRJ4 1543 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 FRMPD2Q68DX3 1309 aaPredicted RBP12.56□□□□□ -0.4
VPS39-201ENST00000318006 SOWAHDA6NJG2 315 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 DDX39AO00148 427 aaKnown RBP12.56□□□□□ -0.4
VPS39-201ENST00000318006 FMNL1O95466 1100 aaPredicted RBP12.56□□□□□ -0.4
VPS39-201ENST00000318006 DOK7Q18PE1 504 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS39-201ENST00000318006 LARGE1O95461 756 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 TECP42680 631 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 FAM196AQ6ZSG2 479 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 DPH6Q7L8W6 267 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 ACRBPQ8NEB7 543 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 MRPL44Q9H9J2 332 aaKnown RBP12.56□□□□□ -0.4
VPS39-201ENST00000318006 RIC8AQ9NPQ8 531 aa12.56□□□□□ -0.4
VPS39-201ENST00000318006 GCNT3O95395 438 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 ABCB4P21439 1286 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 NAA30Q147X3 362 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 LCORLQ8N3X6 602 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 ENOX1Q8TC92 643 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS39-201ENST00000318006 PASKQ96RG2 1323 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 LRRC7Q96NW7 1537 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 PRKAB2O43741 272 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 RPN1P04843 607 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 SNX16P57768 344 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 DYNLL1P63167 89 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 RASSF7Q02833 373 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 ARID5BQ14865 1188 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 CERKLQ49MI3 558 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 SCYL3Q8IZE3 742 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 BBOF1Q8ND07 529 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 TTC16Q8NEE8 873 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 PCDHA12Q9UN75 941 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 USTQ9Y2C2 406 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 ZNF335Q9H4Z2 1342 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 LAMC1P11047 1609 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 EXOC3O60645 756 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 HARSP12081 509 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 EEF1GP26641 437 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 CLEC17AQ6ZS10 378 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 MAEAQ7L5Y9 396 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 MYOCDQ8IZQ8 938 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 CCT6BQ92526 530 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 KIFC2Q96AC6 838 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 TRPC5Q9UL62 973 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 A0A087WWV3 80 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 SH2B2O14492 632 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 LONP1P36776 959 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 KIF23Q02241 960 aaPredicted RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 SRLQ86TD4 932 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 PALM2Q8IXS6 379 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 PPP4R1Q8TF05 950 aa12.55□□□□□ -0.4
VPS39-201ENST00000318006 ZCCHC17Q9NP64 241 aaKnown RBP12.55□□□□□ -0.4
VPS39-201ENST00000318006 XRCC5P13010 732 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 STMN1P16949 149 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 CYP2C19P33261 490 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 TRAPPC10P48553 1259 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 CTAGE3PQ8IX95 158 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 CCDC89Q8N998 374 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 SYMPKQ92797 1274 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 CD2APQ9Y5K6 639 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 SERPINB6P35237 376 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 PDCLQ13371 301 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 SUSD4Q5VX71 490 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 ABTB1Q969K4 478 aaPredicted RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 TUBGCP2Q9BSJ2 902 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 GAS7O60861 476 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 IFNAR1P17181 557 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 POLR2FP61218 127 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 ICA1Q05084 483 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 RASGRF1Q13972 1273 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 SEPT2Q15019 361 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 LINC00301Q8NCQ3 95 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 CNKSR1Q969H4 720 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 PIH1D3Q9NQM4 214 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 NOVA2Q9UNW9 492 aaKnown RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.54□□□□□ -0.4
VPS39-201ENST00000318006 CRCPO75575 148 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 BBOX1O75936 387 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 TRIM37O94972 964 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 STRN3Q13033 797 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 RASA3Q14644 834 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 DCUN1D2Q6PH85 259 aa12.54□□□□□ -0.4
VPS39-201ENST00000318006 ARHGEF18Q6ZSZ5 1173 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms