RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 TTC31Q49AM3 519 aaPredicted RBP21.21■□□□□ 0.99
RTN4-201ENST00000317610 USP17L1Q7RTZ2 530 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 CCDC155Q8N6L0 562 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 CAVIN3Q969G5 261 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 DYNLL2Q96FJ2 89 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 FAM107BQ9H098 131 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 CCNT1O60563 726 aaKnown RBP21.21■□□□□ 0.99
RTN4-201ENST00000317610 HAUS3Q68CZ6 603 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 CCDC84Q86UT8 332 aaPredicted RBP21.21■□□□□ 0.99
RTN4-201ENST00000317610 PACS2Q86VP3 889 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 RRP36Q96EU6 259 aaKnown RBP21.21■□□□□ 0.99
RTN4-201ENST00000317610 TFCP2L1Q9NZI6 479 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 PVALEFA0A1B0GWK0 134 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 ASTE1Q2TB18 679 aaPredicted RBP21.2■□□□□ 0.98
RTN4-201ENST00000317610 LETM2Q2VYF4 491 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 NEK8Q86SG6 692 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 BAP1Q92560 729 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 TMEM47Q9BQJ4 181 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 EDEM3Q9BZQ6 932 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 ANKRD2Q9GZV1 360 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 STIM2Q9P246 746 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 COL16A1Q07092 1604 aaPredicted RBP21.2■□□□□ 0.98
RTN4-201ENST00000317610 NAV1Q8NEY1 1877 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 OPA1O60313 960 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 HOXA7P31268 230 aaPredicted RBP21.2■□□□□ 0.98
RTN4-201ENST00000317610 ALS2CLQ60I27 953 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 SPTY2D1Q68D10 685 aaPredicted RBP21.2■□□□□ 0.98
RTN4-201ENST00000317610 NFRKBQ6P4R8 1299 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 UNC13DQ70J99 1090 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 HPS3Q969F9 1004 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 CALML4Q96GE6 196 aa21.2■□□□□ 0.98
RTN4-201ENST00000317610 FGFR1OPO95684 399 aaKnown RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 TSPY3P0CV98 308 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 TSPY8P0CW00 308 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 TECP42680 631 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 RPS8P62241 208 aaKnown RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 MAPK8IP2Q13387 824 aaPredicted RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 FOXR2Q6PJQ5 311 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 GUF1Q8N442 669 aaKnown RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 CDCA7Q9BWT1 371 aaPredicted RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 MKNK2Q9HBH9 465 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 SLC39A2Q9NP94 309 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 FAM207AQ9NSI2 230 aaPredicted RBP21.19■□□□□ 0.98
RTN4-201ENST00000317610 STK17AQ9UEE5 414 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 GRIN2DO15399 1336 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 IRS2Q9Y4H2 1338 aa21.19■□□□□ 0.98
RTN4-201ENST00000317610 NAPAP54920 295 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 NNTQ13423 1086 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 SLC4A8Q2Y0W8 1093 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 GLE1Q53GS7 698 aaKnown RBP21.18■□□□□ 0.98
RTN4-201ENST00000317610 ARHGAP27Q6ZUM4 889 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 SV2BQ7L1I2 683 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 DZIP1Q86YF9 867 aaKnown RBP21.18■□□□□ 0.98
RTN4-201ENST00000317610 CAPS2Q9BXY5 557 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 DEF6Q9H4E7 631 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 C6orf50Q9HD87 102 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 BLOC1S4Q9NUP1 217 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 A0A087WUV0 522 aaPredicted RBP21.18■□□□□ 0.98
RTN4-201ENST00000317610 SSU72P8A0A1W2PR75 194 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 LRRC53A6NM62 1247 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 KLRF2D3W0D1 207 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 EIF3HO15372 352 aaKnown RBP eCLIP21.18■□□□□ 0.98
RTN4-201ENST00000317610 AKR1B10O60218 316 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 GNA11P29992 359 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 MAGEA1P43355 309 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 GRB10Q13322 594 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 DRC1Q96MC2 740 aa21.18■□□□□ 0.98
RTN4-201ENST00000317610 MYMKA6NI61 221 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 CLSTN1O94985 981 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 SKOR1P84550 965 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 LRRC63Q05C16 580 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 PDXDC1Q6P996 788 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 RNF10Q8N5U6 811 aaKnown RBP21.17■□□□□ 0.98
RTN4-201ENST00000317610 TLR10Q9BXR5 811 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 SALL4Q9UJQ4 1053 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 TSKSQ9UJT2 592 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 SMCO2A6NFE2 343 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 RBAK-RBAKDNI3L0D1 243 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 RGL2O15211 777 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 CCDC181Q5TID7 509 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 LRRC55Q6ZSA7 311 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 RRAGAQ7L523 313 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 TSEN2Q8NCE0 465 aaKnown RBP21.17■□□□□ 0.98
RTN4-201ENST00000317610 ACSBG1Q96GR2 724 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 MMRN2Q9H8L6 949 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 RNF14Q9UBS8 474 aa21.17■□□□□ 0.98
RTN4-201ENST00000317610 PAFAH1B1P43034 410 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 KLHDC7AQ5VTJ3 777 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 TADA2BQ86TJ2 420 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 ZNF444Q8N0Y2 327 aaPredicted RBP21.16■□□□□ 0.98
RTN4-201ENST00000317610 SH3RF3Q8TEJ3 882 aaPredicted RBP21.16■□□□□ 0.98
RTN4-201ENST00000317610 PNMA5Q96PV4 448 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 MTMR9Q96QG7 549 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 ZNF831Q5JPB2 1677 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 A6NNZ2 444 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 ANKRD65E5RJM6 399 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 RASA1P20936 1047 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 SMARCA1P28370 1054 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 SLC7A5Q01650 507 aa21.16■□□□□ 0.98
RTN4-201ENST00000317610 TUBB8Q3ZCM7 444 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms