RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 GNAQP50148 359 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 PPP2R5BQ15173 497 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 NEK1Q96PY6 1258 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 MYL10Q9BUA6 226 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 SPZ1Q9BXG8 430 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 COL20A1Q9P218 1284 aa30.65■■■□□ 2.5
CDKN2A-201ENST00000304494 OPLAHO14841 1288 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 KRT32Q14532 448 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 TSGA10IPQ3SY00 556 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 TMEM63BQ5T3F8 832 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 ARHGEF16Q5VV41 709 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 SLC12A7Q9Y666 1083 aa30.64■■■□□ 2.5
CDKN2A-201ENST00000304494 STXBP2Q15833 593 aa30.63■■■□□ 2.49
CDKN2A-201ENST00000304494 CXCL17Q6UXB2 119 aa30.63■■■□□ 2.49
CDKN2A-201ENST00000304494 PCDH10Q9P2E7 1040 aa30.63■■■□□ 2.49
CDKN2A-201ENST00000304494 TRIM43BA6NCK2 446 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 ARVCFO00192 962 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 PTGS1P23219 599 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 CPT1AP50416 773 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 CDK7P50613 346 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 COL9A3Q14050 684 aaPredicted RBP30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 TTLL4Q14679 1199 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 SH3RF1Q7Z6J0 888 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 OR6J1Q8NGC5 347 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 TRIM43Q96BQ3 446 aaPredicted RBP30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 RRP36Q96EU6 259 aaKnown RBP30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 SEZ6LQ9BYH1 1024 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 PXMP2Q9NR77 195 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 TMEM39AQ9NV64 488 aa30.62■■■□□ 2.49
CDKN2A-201ENST00000304494 LTBP2Q14767 1821 aa30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 KIAA0355O15063 1070 aa30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 FAAP100Q0VG06 881 aa30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 BRDTQ58F21 947 aaPredicted RBP30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 ERICH6BQ5W0A0 696 aa30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 LRRC2Q9BYS8 371 aa30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 SEC63Q9UGP8 760 aaKnown RBP30.61■■■□□ 2.49
CDKN2A-201ENST00000304494 TXNP10599 105 aaKnown RBP30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 EIF2AK2P19525 551 aaKnown RBP30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 SYNE3Q6ZMZ3 975 aa30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 DHX32Q7L7V1 743 aaKnown RBP30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 SGMS1Q86VZ5 419 aa30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 POLR3EQ9NVU0 708 aa30.6■■■□□ 2.49
CDKN2A-201ENST00000304494 GCOM1H8Y6P7 765 aaPredicted RBP30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 TLR3O15455 904 aaKnown RBP30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 HMGB1P09429 215 aaKnown RBP30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 POLR2MP0CAP2 368 aa30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 RASEFQ8IZ41 740 aa30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 PIBF1Q8WXW3 757 aa30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 BADQ92934 168 aa30.59■■■□□ 2.49
CDKN2A-201ENST00000304494 EIF3JO75822 258 aaKnown RBP30.58■■■□□ 2.49
CDKN2A-201ENST00000304494 NR3C2P08235 984 aa30.58■■■□□ 2.49
CDKN2A-201ENST00000304494 RAG1P15918 1043 aa30.58■■■□□ 2.49
CDKN2A-201ENST00000304494 LRIT3Q3SXY7 679 aa30.58■■■□□ 2.49
CDKN2A-201ENST00000304494 PPP4R2Q9NY27 417 aa30.58■■■□□ 2.49
CDKN2A-201ENST00000304494 LAMA3Q16787 3333 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 REC8O95072 547 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 RXRAP19793 462 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 HOXA13P31271 388 aaPredicted RBP30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 EXOSC10Q01780 885 aaKnown RBP30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 ITGA7Q13683 1181 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 SEPT14Q6ZU15 432 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 FANCBQ8NB91 859 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 SLC43A3Q8NBI5 491 aa30.57■■■□□ 2.48
CDKN2A-201ENST00000304494 PLEKHA8P1O95397 391 aa30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 CENPBP07199 599 aaPredicted RBP30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 ADCK5Q3MIX3 580 aa30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 FAM126BQ8IXS8 530 aa30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 SRBD1Q8N5C6 995 aaKnown RBP30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 PDCD2LQ9BRP1 358 aa30.56■■■□□ 2.48
CDKN2A-201ENST00000304494 KPNA6O60684 536 aa30.55■■■□□ 2.48
CDKN2A-201ENST00000304494 ARIH2O95376 493 aa30.55■■■□□ 2.48
CDKN2A-201ENST00000304494 CCDC62Q6P9F0 684 aa30.55■■■□□ 2.48
CDKN2A-201ENST00000304494 MICU3Q86XE3 530 aa30.55■■■□□ 2.48
CDKN2A-201ENST00000304494 A6NJR5 290 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 SOX1O00570 391 aaPredicted RBP30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 HSPA4P34932 840 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 APOA5Q6Q788 366 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 COPS5Q92905 334 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 KCNB2Q92953 911 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 TBX21Q9UL17 535 aa30.54■■■□□ 2.48
CDKN2A-201ENST00000304494 MYL3P08590 195 aa30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 ITGB8P26012 769 aa30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 PURAQ00577 322 aaKnown RBP30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 PGM5Q15124 567 aa30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 FCHSD1Q86WN1 690 aa30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 RAB11FIP4Q86YS3 637 aa30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 MTG1Q9BT17 334 aaPredicted RBP30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 RBM28Q9NW13 759 aaKnown RBP30.53■■■□□ 2.48
CDKN2A-201ENST00000304494 BAZ2BQ9UIF8 2168 aaKnown RBP30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 TIMP1P01033 207 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 GH1P01241 217 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 CD4P01730 458 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 MYCLP12524 364 aaPredicted RBP30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 PSMC6P62333 389 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 LY6KQ17RY6 165 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 TMTC3Q6ZXV5 915 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 CMTR1Q8N1G2 835 aaKnown RBP30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 CUL5Q93034 780 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 TCEANC2Q96MN5 208 aa30.52■■■□□ 2.48
CDKN2A-201ENST00000304494 SZT2Q5T011 3432 aa30.52■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms